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4F1I
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Crystal structure of SeMet TDP2 from Caenorhabditis elegans
分子名称: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL
著者Shi, K, Kurahashi, K, Aihara, H.
登録日2012-05-07
公開日2012-10-31
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4Z2B
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BU of 4z2b by Molmil
The structure of human PDE12 residues 161-609 in complex with GSK3036342A
分子名称: 1,2-ETHANEDIOL, 2',5'-phosphodiesterase 12, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Nolte, R.T, Wisely, B, Wang, L, Wood, E.R.
登録日2015-03-29
公開日2015-06-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors.
J.Biol.Chem., 290, 2015
4Z0V
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BU of 4z0v by Molmil
The structure of human PDE12 residues 161-609
分子名称: 2',5'-phosphodiesterase 12, GLYCEROL, MAGNESIUM ION
著者Nolte, R.T, Wisely, B, Wang, L, Wood, E.R.
登録日2015-03-26
公開日2015-06-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors.
J.Biol.Chem., 290, 2015
4ZKF
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BU of 4zkf by Molmil
Crystal structure of human phosphodiesterase 12
分子名称: 2',5'-phosphodiesterase 12, MAGNESIUM ION
著者Kim, S.Y, Kohno, T, Mori, T, Kitano, K, Hakoshima, T.
登録日2015-04-30
公開日2015-06-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of human phosphodiesterase
To Be Published
8BVM
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BU of 8bvm by Molmil
Cryo-EM structure of Hfq-Crc-rbsB translation repression complex
分子名称: Catabolite repression control protein, RNA-binding protein Hfq, rbsB mRNA
著者Dendooven, T, Luisi, B.F.
登録日2022-12-04
公開日2023-01-25
最終更新日2023-02-08
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding.
Embo J., 42, 2023
8BVJ
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Hfq-Crc-estA translation repression complex
分子名称: Catabolite repression control protein, RNA-binding protein Hfq, estA mRNA
著者Dendooven, T, Luisi, B.F.
登録日2022-12-04
公開日2023-01-25
最終更新日2023-02-08
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding.
Embo J., 42, 2023
8BVH
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Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly.
分子名称: Catabolite repression control protein, RNA-binding protein Hfq, amiE
著者Dendooven, T, Luisi, B.F.
登録日2022-12-03
公開日2023-06-07
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding.
Embo J., 42, 2023
2F2F
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Crystal structure of cytolethal distending toxin (CDT) from Actinobacillus actinomycetemcomitans
分子名称: Cytolethal distending toxin A, Cytolethal distending toxin B, cytolethal distending toxin C
著者Yamada, T, Komoto, J, Saiki, K, Konishi, K, Takusagawa, F.
登録日2005-11-16
公開日2006-03-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Variation of loop sequence alters stability of cytolethal distending toxin (CDT): crystal structure of CDT from Actinobacillus actinomycetemcomitans
Protein Sci., 15, 2006
4GEW
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Crystal structure of TDP2 from C. elegans
分子名称: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL
著者Shi, K, Kurahashi, K, Aihara, H.
登録日2012-08-02
公開日2012-10-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
5TVP
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SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), ...
著者Schellenberg, M.J, Williams, R.S.
登録日2016-11-09
公開日2017-10-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.
Science, 357, 2017
4B8C
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nuclease module of the yeast Ccr4-Not complex
分子名称: GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1, GLUCOSE-REPRESSIBLE ALCOHOL DEHYDROGENASE TRANSCRIPTIONAL EFFECTOR, POLY(A) RIBONUCLEASE POP2
著者Basquin, J, Conti, E.
登録日2012-08-26
公開日2012-11-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Architecture of the Nuclease Module of the Yeast Ccr4-not Complex: The not1-Caf1-Ccr4 Interaction.
Mol.Cell, 48, 2012
5TVQ
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Mouse Tdp2 catalytic domain bound to SUMO2
分子名称: ACETATE ION, CALCIUM ION, Small ubiquitin-related modifier 2, ...
著者Schellenberg, M.J, Williams, R.S.
登録日2016-11-09
公開日2017-09-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.
Science, 357, 2017
6O1L
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BU of 6o1l by Molmil
Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex
分子名称: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
著者Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
登録日2019-02-20
公開日2019-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Architectural principles for Hfq/Crc-mediated regulation of gene expression.
Elife, 8, 2019
6O1K
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Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:2:2 complex (core complex)
分子名称: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
著者Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
登録日2019-02-20
公開日2019-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Architectural principles for Hfq/Crc-mediated regulation of gene expression
Elife, 8, 2019
6O1M
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BU of 6o1m by Molmil
Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:4:2 complex
分子名称: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
著者Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
登録日2019-02-20
公開日2019-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Architectural principles for Hfq/Crc-mediated regulation of gene expression.
Elife, 8, 2019
8UW3
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Human LINE-1 retrotransposon ORF2 protein engaged with template RNA in elongation state
分子名称: Complementary DNA, LINE-1 retrotransposable element ORF2 protein, THYMIDINE-5'-TRIPHOSPHATE, ...
著者Thawani, A, Florez Ariza, A.J, Collins, K, Nogales, E.
登録日2023-11-06
公開日2023-12-20
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Template and target-site recognition by human LINE-1 in retrotransposition.
Nature, 626, 2024
7NXV
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BU of 7nxv by Molmil
Crystal structure of the complex of DNase I/G-actin/PPP1R15A_582-621
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Yan, Y, Ron, D.
登録日2021-03-19
公開日2021-09-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Higher-order phosphatase-substrate contacts terminate the integrated stress response.
Nat.Struct.Mol.Biol., 28, 2021
7NZM
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BU of 7nzm by Molmil
Cryo-EM structure of pre-dephosphorylation complex of phosphorylated eIF2alpha with trapped holophosphatase (PP1A_D64A/PPP1R15A/G-actin/DNase I)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Yan, Y, Hardwick, S, Ron, D.
登録日2021-03-24
公開日2021-09-29
最終更新日2021-10-20
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Higher-order phosphatase-substrate contacts terminate the integrated stress response.
Nat.Struct.Mol.Biol., 28, 2021
4K6L
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Structure of Typhoid Toxin
分子名称: Cytolethal distending toxin subunit B homolog, GLYCEROL, Putative pertussis-like toxin subunit
著者Gao, X, Song, J, Galan, J.
登録日2013-04-16
公開日2013-07-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.393 Å)
主引用文献Structure and function of the Salmonella Typhi chimaeric A(2)B(5) typhoid toxin.
Nature, 499, 2013
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
著者Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
登録日2012-12-20
公開日2013-01-30
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
8SXU
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BU of 8sxu by Molmil
Structure of LINE-1 ORF2p with an oligo(A) template
分子名称: LINE-1 retrotransposable element ORF2 protein, RNA (25-MER)
著者van Eeuwen, T, Taylor, M.S, Rout, M.P.
登録日2023-05-24
公開日2024-01-10
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.66 Å)
主引用文献Structures, functions and adaptations of the human LINE-1 ORF2 protein.
Nature, 626, 2024
8SXT
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BU of 8sxt by Molmil
Structure of LINE-1 ORF2p with template:primer hybrid
分子名称: DNA primer, LINE-1 retrotransposable element ORF2 protein, MAGNESIUM ION, ...
著者van Eeuwen, T, Taylor, M.S, Rout, M.P.
登録日2023-05-24
公開日2024-01-10
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structures, functions and adaptations of the human LINE-1 ORF2 protein.
Nature, 626, 2024
7EE6
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Crystal structure of PltC toxin
分子名称: ACETONE, CITRATE ANION, Cytolethal distending toxin subunit B family protein, ...
著者Liu, X.Y, Chen, Z, Gao, X.
登録日2021-03-17
公開日2021-12-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin.
Mbio, 13, 2022
2A3Z
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Ternary complex of the WH2 domain of WASP with Actin-DNAse I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Chereau, D, Kerff, F, Dominguez, R.
登録日2005-06-27
公開日2005-11-01
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.078 Å)
主引用文献Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly
Proc.Natl.Acad.Sci.Usa, 102, 2005
2A40
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Ternary complex of the WH2 domain of WAVE with Actin-DNAse I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Chereau, D, Kerff, F, Dominguez, R.
登録日2005-06-27
公開日2005-11-01
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly
Proc.Natl.Acad.Sci.Usa, 102, 2005

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