PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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8PSN	Tilapia Lake Virus polymerase in vRNA initiation state (transcriptase conformation) 分子名称: 5' vRNA end - vRNA loop (40-mer), DNA (5'-D(*(CTP))-3'), MAGNESIUM ION, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.73 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PSO	Tilapia Lake Virus polymerase in vRNA initiation state (core only) 分子名称: 5' vRNA end - vRNA loop (40-mer), DNA (5'-D(*(CTP))-3'), MAGNESIUM ION, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PSS	Tilapia Lake Virus polymerase in cRNA pre-initiation state mode B (core-endo only) 分子名称: 5' cRNA end - cRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
1C3V	DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC 分子名称: DIHYDRODIPICOLINATE REDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PYRIDINE-2,6-DICARBOXYLIC ACID, ... 著者 Cirilli, M, Zheng, R, Scapin, G, Blanchard, J.S, TB Structural Genomics Consortium (TBSGC) 登録日 1999-07-28 公開日 2003-08-26 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 The three-dimensional structures of the Mycobacterium tuberculosis dihydrodipicolinate reductase-NADH-2,6-PDC and -NADPH-2,6-PDC complexes. Structural and mutagenic analysis of relaxed nucleotide specificity Biochemistry, 42, 2003
8PT2	Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (transcriptase conformation) 分子名称: 5' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.59 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PT7	Tilapia Lake Virus polymerase in cRNA pre-initiation state mode A (core-endo only) 分子名称: 5'/3' cRNA ends - cRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PZQ	Model for focused reconstruction of influenza A RNP-like particle 分子名称: Nucleoprotein, RNA (5'P-(UC)6-FAM3') 著者 Chenavier, F, Estrozi, L.F, Zarkadas, E, Ruigrok, R.W.H, Schoehn, G, Ballandras-Colas, A, Crepin, T. 登録日 2023-07-27 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (5.3 Å) 主引用文献 Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation. Sci Adv, 9, 2023
8PP4	Binary crystal structure of positively supercharged ferritin variant Ftn(pos) and reduced charge negatively supercharged ferritin variant Ftn(neg)-m3 (Mg formate condition) 分子名称: CHLORIDE ION, FE (III) ION, Ferritin heavy chain, ... 著者 Lang, L, Beck, T. 登録日 2023-07-06 公開日 2023-12-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 Assembly Requirements for the Construction of Large-Scale Binary Protein Structures. Biomacromolecules, 25, 2024
8PSQ	Tilapia Lake Virus polymerase in cRNA pre-initiation state mode A (core only) 分子名称: 5' cRNA end - cRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.65 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PSU	Tilapia Lake Virus polymerase in vRNA pre-initiation state mode A (core only) 分子名称: 5' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PTH	Tilapia Lake Virus polymerase in vRNA pre-initiation state mode B (open core | partial replicase conformation) 分子名称: 3' vRNA end - vRNA loop (40-mer), Polymerase acidic protein (PA-like), Putative PB1, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-14 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.73 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PP2	Binary crystal structure of positively supercharged ferritin variant Ftn(pos) and native(K86Q) human heavy chain ferritin (Mg formate condition) 分子名称: FE (III) ION, Ferritin heavy chain, N-terminally processed, ... 著者 Lang, L, Beck, T. 登録日 2023-07-06 公開日 2023-12-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Assembly Requirements for the Construction of Large-Scale Binary Protein Structures. Biomacromolecules, 25, 2024
8PSX	Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation) 分子名称: 5' vRNA end - vRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PT6	Tilapia Lake Virus polymerase in vRNA initiation state (replicase conformation) 分子名称: 5' vRNA end - vRNA loop (40-mer), DNA (5'-D(*(CTP))-3'), MAGNESIUM ION, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2023-12-27 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PP3	Binary crystal structure of positively supercharged ferritin variant Ftn(pos) and crystal contact tuned negatively supercharged ferritin variant Ftn(neg)-m1 (Mg formate condition) 分子名称: FE (III) ION, Ferritin heavy chain, GLYCEROL, ... 著者 Lang, L, Beck, T. 登録日 2023-07-06 公開日 2023-12-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Assembly Requirements for the Construction of Large-Scale Binary Protein Structures. Biomacromolecules, 25, 2024
8G0M	Structure of complex between TV6.6 and CD98hc ECD 分子名称: 1,2-ETHANEDIOL, 4F2 cell-surface antigen heavy chain, TETRAETHYLENE GLYCOL, ... 著者 Kariolis, M.S, Lexa, K, Liau, N.P.D, Srivastava, D, Tran, H, Wells, R.C. 登録日 2023-01-31 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 CD98hc is a target for brain delivery of biotherapeutics. Nat Commun, 14, 2023
8PZP	Model for influenza A virus helical ribonucleoprotein-like structure 分子名称: Nucleoprotein, RNA (5'P-(UC)6-FAM3') 著者 Chenavier, F, Estrozi, L.F, Zarkadas, E, Ruigrok, R.W.H, Schoehn, G, Ballandras-Colas, A, Crepin, T. 登録日 2023-07-27 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation. Sci Adv, 9, 2023
8PYW	Crystal structure of the human Nucleoside-diphosphate kinase B domain bound to compound diphosphate form of AT-9052-Sp. 分子名称: GLYCEROL, Nucleoside diphosphate kinase B, [[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] dihydrogen phosphate 著者 Feracci, M, Chazot, A. 登録日 2023-07-26 公開日 2023-12-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.553 Å) 主引用文献 An exonuclease-resistant chain-terminating nucleotide analogue targeting the SARS-CoV-2 replicase complex. Nucleic Acids Res., 52, 2024
8PSZ	Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation) 分子名称: 5' vRNA end - vRNA loop (40-mer), MAGNESIUM ION, Polymerase acidic protein (PA-like), ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.42 Å) 主引用文献 Structural and functional analysis of the minimal orthomyxovirus-like polymerase of Tilapia Lake Virus from the highly diverged Amnoonviridae family. Nat Commun, 14, 2023
8PEI	Crystal structure of the biphotochromic fluorescent protein SAASoti (C21N/V127T variant) in its green on-state 分子名称: C21N/V127T form of the biphotochromic fluorescent protein SAASoti 著者 Boyko, K.M, Varfolomeeva, L.A, Matyuta, I.O, Gavshina, A.V, Solovyev, I.D, Popov, V.O, Savitsky, A.P. 登録日 2023-06-14 公開日 2024-01-17 最終更新日 2024-07-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The role of the correlated motion(s) of the chromophore in photoswitching of green and red forms of the photoconvertible fluorescent protein mSAASoti. Sci Rep, 14, 2024
8PWR	TINA-conjugated antiparallel DNA triplex 分子名称: DNA (5'-D(*AP*GP*GP*AP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*TP*CP*CP*T)-3'), DNA (5'-D(*TP*GP*GP*TP*GP*(J32)P*GP*T)-3') 著者 Garavis, M, Edwards, P.J.B, Serrano-Chacon, I, Doluca, O, Filichev, V.V, Gonzalez, C. 登録日 2023-07-21 公開日 2024-01-17 最終更新日 2024-03-27 実験手法 SOLUTION NMR 主引用文献 Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex. Nucleic Acids Res., 52, 2024
1BZ9	CRYSTAL STRUCTURE OF MURINE CLASS I MHC H2-DB COMPLEXED WITH A SYNTHETIC PEPTIDE P1027 分子名称: PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN), PROTEIN (PEPTIDE P1027 (FAPGVFPYM)) 著者 Zhao, R, Collins, E.J. 登録日 1998-11-06 公開日 1999-05-24 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural evidence of T cell xeno-reactivity in the absence of molecular mimicry. J.Exp.Med., 189, 1999
8Q7N	cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, MINX pre-mRNA, Microfibrillar-associated protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Urlaub, H, Stark, H, Luehrmann, R. 登録日 2023-08-16 公開日 2024-01-24 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins. Embo J., 43, 2024
8PV8	Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2024-01-10 最終更新日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PFK	RNA structure with 1-methylpseudoridine, C2 space group 分子名称: MAGNESIUM ION, RNA (12-mer) 著者 Spingler, B, McAuley, K, Nievergelt, P, Thorn, A. 登録日 2023-06-16 公開日 2024-01-31 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.321 Å) 主引用文献 RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines. Chemmedchem, 19, 2024

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