Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6O1M
DownloadVisualize
BU of 6o1m by Molmil
Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:4:2 complex
分子名称: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
著者Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
登録日2019-02-20
公開日2019-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Architectural principles for Hfq/Crc-mediated regulation of gene expression.
Elife, 8, 2019
2N1K
DownloadVisualize
BU of 2n1k by Molmil
Structure of the Third Type III Domain from Human Fibronectin
分子名称: Fibronectin
著者Stine, J.M, Sun, Y, Armstrong, G, Briknarova, K.
登録日2015-04-04
公開日2015-11-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure and Unfolding of the Third Type III Domain from Human Fibronectin.
Biochemistry, 54, 2015
2MPR
DownloadVisualize
BU of 2mpr by Molmil
MALTOPORIN FROM SALMONELLA TYPHIMURIUM
分子名称: CALCIUM ION, MALTOPORIN, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Meyer, J.E.W, Schulz, G.E.
登録日1997-02-07
公開日1997-04-01
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of maltoporin from Salmonella typhimurium ligated with a nitrophenyl-maltotrioside.
J.Mol.Biol., 266, 1997
2N2K
DownloadVisualize
BU of 2n2k by Molmil
Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand
分子名称: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin
著者Liu, Z, Gong, Z, Tang, C.
登録日2015-05-10
公開日2015-07-08
最終更新日2015-09-23
実験手法SOLUTION NMR
主引用文献Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition.
Elife, 4, 2015
6NNA
DownloadVisualize
BU of 6nna by Molmil
Human Fatty Acid Synthase Psi/KR Tri-Domain with NADPH and Compound 22
分子名称: 1,2-ETHANEDIOL, Fatty acid synthase,Fatty acid synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Toms, A.V, Martin, M.W.
登録日2019-01-14
公開日2019-02-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Discovery and optimization of novel piperazines as potent inhibitors of fatty acid synthase (FASN).
Bioorg. Med. Chem. Lett., 29, 2019
6NQD
DownloadVisualize
BU of 6nqd by Molmil
Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 G52K5 heavy chain, ...
著者Fang, Q, Rossmann, M.G.
登録日2019-01-21
公開日2019-03-06
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献A sequestered fusion peptide in the structure of an HIV-1 transmitted founder envelope trimer.
Nat Commun, 10, 2019
2MPZ
DownloadVisualize
BU of 2mpz by Molmil
Atomic model of the Abeta D23N "Iowa" mutant using solid-state NMR, EM and Rosetta modeling
分子名称: Amyloid beta A4 protein
著者Sgourakis, N.G, Qiang, W.
登録日2014-06-10
公開日2015-04-22
最終更新日2024-05-01
実験手法SOLID-STATE NMR
主引用文献Modeling an in-register, parallel "iowa" a beta fibril structure using solid-state NMR data from labeled samples with rosetta.
Structure, 23, 2015
2NCH
DownloadVisualize
BU of 2nch by Molmil
Solution structure of translation initiation factor IF1 from wolbachia endosymbiont strain TRS of Brugia malayi
分子名称: Translation initiation factor IF-1
著者Kabra, A, Nag, J, Arora, A, Bhattacharya, S.M.
登録日2016-03-31
公開日2017-04-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of translation initiation factor IF1 from wolbachia endosymbiont strain TRS of Brugia malayi
To be Published
4OIN
DownloadVisualize
BU of 4oin by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077
分子名称: (2Z)-2-methylbut-2-enoic acid, 5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', ...
著者Zhang, Y, Ebright, R.H, Arnold, E.
登録日2014-01-20
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
6OD5
DownloadVisualize
BU of 6od5 by Molmil
Human TCF4 C-terminal bHLH domain in Complex with 12-bp Oligonucleotide Containing E-box Sequence with 5-carboxylcytosines
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*AP*(1CC)P*GP*CP*AP*CP*GP*TP*GP*(1CC)P*G)-3'), ...
著者Horton, J.R, Cheng, X, Yang, J.
登録日2019-03-25
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.
Nucleic Acids Res., 47, 2019
4MDH
DownloadVisualize
BU of 4mdh by Molmil
REFINED CRYSTAL STRUCTURE OF CYTOPLASMIC MALATE DEHYDROGENASE AT 2.5-ANGSTROMS RESOLUTION
分子名称: CYTOPLASMIC MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
著者Birktoft, J.J, Banaszak, L.J.
登録日1989-04-12
公開日1989-04-19
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Refined crystal structure of cytoplasmic malate dehydrogenase at 2.5-A resolution.
Biochemistry, 28, 1989
4MEX
DownloadVisualize
BU of 4mex by Molmil
Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Feng, Y, Zhang, Y, Arnold, E, Ebright, R.H.
登録日2013-08-27
公開日2014-05-21
最終更新日2014-06-25
実験手法X-RAY DIFFRACTION (3.902 Å)
主引用文献Transcription inhibition by the depsipeptide antibiotic salinamide A.
Elife, 3, 2014
4LTC
DownloadVisualize
BU of 4ltc by Molmil
Crystal structure of yeast 20S proteasome in complex with enone carmaphycin analogue 6
分子名称: N-hexanoyl-L-valyl-N~1~-[(4S,5S,6R)-5-hydroxy-2,6-dimethyloctan-4-yl]-N~5~,N~5~-dimethyl-L-glutamamide, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ...
著者Stein, M, Trivella, D.B.B, Groll, M.
登録日2013-07-23
公開日2014-07-02
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Enzyme inhibition by hydroamination: design and mechanism of a hybrid carmaphycin-syringolin enone proteasome inhibitor.
Chem.Biol., 21, 2014
2NN6
DownloadVisualize
BU of 2nn6 by Molmil
Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
分子名称: 3'-5' exoribonuclease CSL4 homolog, Exosome complex exonuclease RRP4, Exosome complex exonuclease RRP40, ...
著者Lima, C.D.
登録日2006-10-23
公開日2006-12-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Cell(Cambridge,Mass.), 127, 2006
2MP4
DownloadVisualize
BU of 2mp4 by Molmil
Solution Structure of ADF like UNC-60A Protein of Caenorhabditis elegans
分子名称: Actin-depolymerizing factor 1, isoforms a/b
著者Shukla, V, Yadav, R, Kabra, A, Kumar, D, Ono, S, Arora, A.
登録日2014-05-11
公開日2014-06-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR Structure and Backbone dynamics of ADF like UNC-60A protein from Caenorhabditis elegans: its divergence from conventional ADF/cofilin
To be Published
2N6Z
DownloadVisualize
BU of 2n6z by Molmil
Solution structure of the salicylate-loaded ArCP from yersiniabactin synthetase
分子名称: HMWP2 nonribosomal peptide synthetase
著者Goodrich, A.C, Harden, B.J, Frueh, D.P.
登録日2015-08-31
公開日2015-09-23
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts.
J.Am.Chem.Soc., 137, 2015
6N5S
DownloadVisualize
BU of 6n5s by Molmil
Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
著者Shoffner, G.M, Peng, Z, Guo, F.
登録日2018-11-22
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography
To Be Published
6OCZ
DownloadVisualize
BU of 6ocz by Molmil
Crystal Structure of Mycobacterium tuberculosis Proteasome in Complex with Phenylimidazole-based Inhibitor A86
分子名称: CITRIC ACID, DIMETHYLFORMAMIDE, N-{(2S)-1-({(2S)-1-[(2,4-difluorobenzyl)amino]-1-oxopropan-2-yl}amino)-1,4-dioxo-4-[(2R)-2-phenylpyrrolidin-1-yl]butan-2-yl}-5-methyl-1,2-oxazole-3-carboxamide (non-preferred name), ...
著者Hsu, H.C, Li, H.
登録日2019-03-25
公開日2019-10-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Selective Phenylimidazole-Based Inhibitors of theMycobacterium tuberculosisProteasome.
J.Med.Chem., 62, 2019
6OEO
DownloadVisualize
BU of 6oeo by Molmil
Cryo-EM structure of mouse RAG1/2 NFC complex (DNA1)
分子名称: CALCIUM ION, DNA (46-MER), DNA (57-MER), ...
著者Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M.
登録日2019-03-27
公開日2020-01-29
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.69 Å)
主引用文献Cutting antiparallel DNA strands in a single active site.
Nat.Struct.Mol.Biol., 27, 2020
6OFE
DownloadVisualize
BU of 6ofe by Molmil
Helical reconstruction of Type III Secretion System Needle filament mutant-PrgI S49A
分子名称: Protein PrgI
著者Guo, E.Z, Galan, J.E.
登録日2019-03-29
公開日2019-07-10
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.61 Å)
主引用文献A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.
Plos Biol., 17, 2019
6OM1
DownloadVisualize
BU of 6om1 by Molmil
Crystal structure of an atypical integrin
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wang, J.C, Springer, T.A.
登録日2019-04-17
公開日2019-12-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献General structural features that regulate integrin affinity revealed by atypical alpha V beta 8.
Nat Commun, 10, 2019
6OND
DownloadVisualize
BU of 6ond by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase produced without CooC, reduced
分子名称: CHLORIDE ION, Carbon monoxide dehydrogenase, FE (III) ION, ...
著者Wittenborn, E.C, Cohen, S.E, Drennan, C.L.
登録日2019-04-21
公開日2019-07-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.723 Å)
主引用文献Structural insight into metallocofactor maturation in carbon monoxide dehydrogenase.
J.Biol.Chem., 294, 2019
6OHR
DownloadVisualize
BU of 6ohr by Molmil
Structure of compound 5 bound human Phospholipase D1 catalytic domain
分子名称: 4-fluoro-N-{(2S)-1-[(5R)-5-(3-fluorophenyl)-2-oxo-1-oxa-3,9-diazaspiro[5.5]undecan-9-yl]propan-2-yl}benzamide, Phospholipase D1, chimeric constuct
著者Metrick, C.M, Chodaparambil, J.V.
登録日2019-04-06
公開日2020-02-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Human PLD structures enable drug design and characterization of isoenzyme selectivity.
Nat.Chem.Biol., 16, 2020
2N3J
DownloadVisualize
BU of 2n3j by Molmil
Solution Structure of the alpha-crystallin domain from the redox-sensitive chaperone, HSPB1
分子名称: Heat shock protein beta-1
著者Rajagopal, P, Liu, Y, Shi, L, Klevit, R.E.
登録日2015-06-03
公開日2015-08-19
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure of the alpha-crystallin domain from the redox-sensitive chaperone, HSPB1.
J.Biomol.Nmr, 63, 2015
6OQU
DownloadVisualize
BU of 6oqu by Molmil
E. coli ATP synthase State 1d
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Stewart, A.G, Sobti, M, Walshe, J.L.
登録日2019-04-29
公開日2020-06-03
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structures provide insight into how E. coli F1FoATP synthase accommodates symmetry mismatch.
Nat Commun, 11, 2020

225158

件を2024-09-18に公開中

PDB statisticsPDBj update infoContact PDBjnumon