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3L4E
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BU of 3l4e by Molmil
1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e
分子名称: SULFATE ION, Uncharacterized peptidase Lmo0363
著者Brunzelle, J.S, Onopriyenko, O, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2009-12-19
公開日2010-07-14
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e
To be Published
7QWI
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BU of 7qwi by Molmil
Vanadate complex of the vanadium-dependent bromoperoxidase from Corallina pilulifera
分子名称: 1,2-ETHANEDIOL, BROMIDE ION, CALCIUM ION, ...
著者Isupov, M.N, Mitchell, D, Littelchild, J.A, Garcia-Rodriguez, E.
登録日2022-01-25
公開日2023-02-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
To Be Published
8F5W
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Dihydropyrimidine Dehydrogenase (DPD) C671S Mutant Soaked with Dihydrothymine and NADPH Quasi-Anaerobically
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Dihydropyrimidine dehydrogenase [NADP(+)], FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kaley, N, Smith, M, Forouzesh, D, Liu, D, Moran, G.
登録日2022-11-15
公開日2023-02-01
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Mammalian dihydropyrimidine dehydrogenase: Added mechanistic details from transient-state analysis of charge transfer complexes.
Arch.Biochem.Biophys., 736, 2023
8RC9
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BU of 8rc9 by Molmil
W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Exposed to air for 2 h
分子名称: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, Formate dehydrogenase, ...
著者Vilela-Alves, G, Manuel, R.R, Pereira, I.C, Romao, M.J, Mota, C.
登録日2023-12-06
公開日2024-07-24
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Substrate-dependent oxidative inactivation of a W-dependent formate dehydrogenase involving selenocysteine displacement.
Chem Sci, 15, 2024
8SVR
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BU of 8svr by Molmil
Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-326
分子名称: (1P)-N-(5-tert-butyl-2-{[(3S)-hexan-3-yl]oxy}phenyl)-5-methyl-1-(2,4,5-trimethoxyphenyl)-1H-1,2,3-triazole-4-carboxamide, DIMETHYL SULFOXIDE, Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide
著者Garcia-Maldonado, E, Huber, A.D, Nithianantham, S, Miller, D.J, Chen, T.
登録日2023-05-17
公開日2024-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Chemical manipulation of an activation/inhibition switch in the nuclear receptor PXR.
Nat Commun, 15, 2024
8SVQ
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BU of 8svq by Molmil
Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-312
分子名称: (1P)-N-(5-tert-butyl-2-{[(3S)-hexan-3-yl]oxy}phenyl)-1-(2,5-dimethoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide, DIMETHYL SULFOXIDE, Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide
著者Garcia-Maldonado, E, Huber, A.D, Nithianantham, S, Miller, D.J, Chen, T.
登録日2023-05-17
公開日2024-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Chemical manipulation of an activation/inhibition switch in the nuclear receptor PXR.
Nat Commun, 15, 2024
8SVO
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BU of 8svo by Molmil
Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-310
分子名称: (1P)-N-(5-tert-butyl-2-{[(2S)-pentan-2-yl]oxy}phenyl)-1-(2-methoxy-5-methylphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide, DIMETHYL SULFOXIDE, Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide
著者Garcia-Maldonado, E, Huber, A.D, Nithianantham, S, Miller, D.J, Chen, T.
登録日2023-05-17
公開日2024-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Chemical manipulation of an activation/inhibition switch in the nuclear receptor PXR.
Nat Commun, 15, 2024
9G0U
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BU of 9g0u by Molmil
Human LTC4 synthase in complex with AZD9898
分子名称: (1~{S},2~{S})-2-[5-[[5-chloranyl-2,4-bis(fluoranyl)phenyl]-(2-fluoranyl-2-methyl-propyl)amino]-3-methoxy-pyrazin-2-yl]carbonylcyclopropane-1-carboxylic acid, DODECYL-BETA-D-MALTOSIDE, Leukotriene C4 synthase, ...
著者Srinivas, H.
登録日2024-07-08
公開日2025-02-26
最終更新日2025-03-05
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery of GJG057, a Potent and Highly Selective Inhibitor of Leukotriene C4 Synthase.
J.Med.Chem., 68, 2025
8WTR
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HUMAN SQUALENE SYNTHASE IN COMPLEX WITH (1S,3R)-3-[2-Chloro-5-(2,2-dimethyl-propyl)-13-(2-methoxy-phenyl)-6,8-dioxo-5,6,7,8,10,11-hexahydro-13H-12-oxa-5,9-diaza-benzocycloundecen-9-yl]-cyclohexanecarboxylic acid
分子名称: (1~{S},3~{R})-3-[(10~{S})-13-chloranyl-2-(2,2-dimethylpropyl)-10-(2-methoxyphenyl)-3,5-bis(oxidanylidene)-9-oxa-2,6-diazabicyclo[9.4.0]pentadeca-1(15),11,13-trien-6-yl]cyclohexane-1-carboxylic acid, PHOSPHATE ION, Squalene synthase
著者Suzuki, M, Haginoya, N, Suzuki, M, Ishigai, Y, Terayama, K, Kanda, A, Sugita, K.
登録日2023-10-19
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of Novel 11-Membered Templates as Squalene Synthase Inhibitors.
J.Med.Chem., 67, 2024
7U9N
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S48A Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, CYCLOHEXYLFORMAMIDE, ...
著者Zheng, C, Boxer, S.G.
登録日2022-03-11
公開日2023-02-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Enhanced active-site electric field accelerates enzyme catalysis.
Nat.Chem., 15, 2023
5KK9
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BU of 5kk9 by Molmil
Connexin 32 G12R N-Terminal Mutant,
分子名称: Gap junction beta-1 protein
著者Dowd, T.L, Barigello, T.A.
登録日2016-06-21
公開日2016-09-28
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Structural studies of N-terminal mutants of Connexin 26 and Connexin 32 using (1)H NMR spectroscopy.
Arch.Biochem.Biophys., 608, 2016
6GX8
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BU of 6gx8 by Molmil
Alpha-galactosidase from Thermotoga maritima in complex with hydrolysed cyclohexene-based carbasugar mimic of galactose
分子名称: (1~{S},2~{S},3~{S},4~{S})-3-fluoranyl-6-(hydroxymethyl)cyclohex-5-ene-1,2,4-triol, Alpha-galactosidase, GLYCEROL, ...
著者Gloster, T.M, Oehler, V.
登録日2018-06-26
公開日2018-08-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Revealing the mechanism for covalent inhibition of glycoside hydrolases by carbasugars at an atomic level.
Nat Commun, 9, 2018
6Z45
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CDK9-Cyclin-T1 complex bound by compound 24
分子名称: (1~{S},3~{R})-3-acetamido-~{N}-[5-chloranyl-4-(5,5-dimethyl-4,6-dihydropyrrolo[1,2-b]pyrazol-3-yl)pyridin-2-yl]cyclohexane-1-carboxamide, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cyclin-T1, ...
著者Ferguson, A, Collie, G.W.
登録日2020-05-22
公開日2020-12-23
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.37 Å)
主引用文献Discovery of AZD4573, a Potent and Selective Inhibitor of CDK9 That Enables Short Duration of Target Engagement for the Treatment of Hematological Malignancies.
J.Med.Chem., 63, 2020
6QI4
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BU of 6qi4 by Molmil
NCS-1 bound to a ligand
分子名称: 2-(1~{H}-indol-3-yl)-~{N}-[(~{E})-(4-nitro-3-oxidanyl-phenyl)methylideneamino]ethanamide, ACETATE ION, CALCIUM ION, ...
著者Sanchez-Barrena, M.J, Blanco-Gabella, P.
登録日2019-01-17
公開日2019-07-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Insights into real-time chemical processes in a calcium sensor protein-directed dynamic library.
Nat Commun, 10, 2019
9D8S
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BU of 9d8s by Molmil
Crystal Structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum (AMP/Mg bound)
分子名称: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-08-20
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Crystal Structure of calcium-dependent protein kinase 1 (CDPK1) from Cryptosporidium parvum (AMP/Mg bound)
To be published
9CGL
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BU of 9cgl by Molmil
Pikromycin Thioesterase Doubly Protected DAP
分子名称: 2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate, Narbonolide/10-deoxymethynolide synthase PikA4, module 6
著者McCullough, T.M, Smith, J.L.
登録日2024-06-29
公開日2024-09-18
最終更新日2025-02-19
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Substrate Trapping in Polyketide Synthase Thioesterase Domains: Structural Basis for Macrolactone Formation.
Acs Catalysis, 14, 2024
5N2C
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BU of 5n2c by Molmil
Crystal structure of the peptidoglycan-associated lipoprotein from Burkholderia cenocepacia
分子名称: 1,2-ETHANEDIOL, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, ACETATE ION, ...
著者Matterazzo, E, Bolognesi, M, Gourlay, L.J.
登録日2017-02-07
公開日2017-07-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Designing Probes for Immunodiagnostics: Structural Insights into an Epitope Targeting Burkholderia Infections.
ACS Infect Dis, 3, 2017
6QO8
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Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis anaerobically soaked with ferrous ions
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
著者Grave, K, Hogbom, M.
登録日2019-02-12
公開日2019-08-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.31921768 Å)
主引用文献Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019
6HKQ
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Human GPX4 in complex with covalent Inhibitor ML162 (S enantiomer)
分子名称: (2~{S})-2-[2-chloranylethanoyl-(3-chloranyl-4-methoxy-phenyl)amino]-~{N}-(2-phenylethyl)-2-thiophen-2-yl-ethanamide, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
著者Hillig, R.C, Moosmayer, D, Hilpmann, A, Hoffmann, L, Schnirch, L, Eaton, J.K, Badock, V, Gradl, S.
登録日2018-09-07
公開日2020-04-01
最終更新日2025-10-01
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Crystal structures of the selenoprotein glutathione peroxidase 4 in its apo form and in complex with the covalently bound inhibitor ML162.
Acta Crystallogr D Struct Biol, 77, 2021
6QO9
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Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis soaked with manganese ions
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
著者Grave, K, Hogbom, M.
登録日2019-02-12
公開日2019-08-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.299 Å)
主引用文献Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.
J.Biol.Inorg.Chem., 24, 2019
8Z06
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BU of 8z06 by Molmil
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRSF(JN.1)
分子名称: Beta-2-microglobulin, MHC class I antigen, Spike protein S2'
著者Tian, J.M, Liu, J.
登録日2024-04-09
公開日2025-01-29
最終更新日2025-05-28
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots.
Nat.Immunol., 26, 2025
6XLR
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BU of 6xlr by Molmil
The 1.23 Angstrom crystal structure of galactose oxidase variant with genetically incorporated Cl2-Tyr272
分子名称: ACETATE ION, CALCIUM ION, COPPER (II) ION, ...
著者Liu, A, Li, J.
登録日2020-06-29
公開日2021-02-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission.
J.Am.Chem.Soc., 142, 2020
6HSF
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Crystal structure of Schistosoma mansoni HDAC8 mutant H292M complexed with PCI-34051
分子名称: 1-[(4-methoxyphenyl)methyl]-~{N}-oxidanyl-indole-6-carboxamide, DIMETHYLFORMAMIDE, GLYCEROL, ...
著者Shaik, T.B, Marek, M, Romier, C.
登録日2018-10-01
公開日2018-10-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.899 Å)
主引用文献Characterization of Histone Deacetylase 8 (HDAC8) Selective Inhibition Reveals Specific Active Site Structural and Functional Determinants.
J. Med. Chem., 61, 2018
8YVS
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Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with castanospermine
分子名称: 1,2-ETHANEDIOL, CASTANOSPERMINE, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65
著者Nakamura, S, Miyazaki, T.
登録日2024-03-29
公開日2025-03-19
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into the inhibition mechanism of glucosidase inhibitors toward kojibiose hydrolase belonging to glycoside hydrolase family 65.
Biosci.Biotechnol.Biochem., 89, 2024
6HV6
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Crystal structure of PatoxP, a cysteine protease-like domain of Photorhabdus asymbiotica toxin PaTox
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Toxin PAU_02230
著者Bogdanovic, X, Wirth, C, Hunte, C.
登録日2018-10-10
公開日2018-12-05
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献A cysteine protease-like domain enhances the cytotoxic effects of thePhotorhabdus asymbioticatoxin PaTox.
J. Biol. Chem., 294, 2019

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