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PDB: 86 results

7BWB
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Bombyx mori GH32 beta-fructofuranosidase BmSUC1
Descriptor: Beta-fructofuranosidase
Authors:Miyazaki, T, Oba, N.
Deposit date:2020-04-14
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into the substrate specificity of Bombyx mori beta-fructofuranosidase belonging to the glycoside hydrolase family 32.
Insect Biochem.Mol.Biol., 127, 2020
7BWC
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BU of 7bwc by Molmil
Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose
Descriptor: Beta-fructofuranosidase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Miyazaki, T, Oba, N.
Deposit date:2020-04-14
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural insight into the substrate specificity of Bombyx mori beta-fructofuranosidase belonging to the glycoside hydrolase family 32.
Insect Biochem.Mol.Biol., 127, 2020
5GW7
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BU of 5gw7 by Molmil
Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose
Descriptor: CALCIUM ION, Glucosidase YgjK, MAGNESIUM ION, ...
Authors:Miyazaki, T, Tonozuka, T.
Deposit date:2016-09-08
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the enzyme-product complex reveals sugar ring distortion during catalysis by family 63 inverting alpha-glycosidase
J.Struct.Biol., 196, 2016
4WVC
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Crystal structure of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8 in complex with Tris and D-glycerate
Descriptor: (2R)-2,3-DIHYDROXYPROPANOIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Miyazaki, T, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2014-11-05
Release date:2015-03-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8.
J.Struct.Biol., 190, 2015
4WVA
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Crystal structure of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8 in complex with Tris
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Miyazaki, T, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2014-11-05
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8.
J.Struct.Biol., 190, 2015
4WVB
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Crystal structure of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8 in complex with glucose
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Uncharacterized protein, ...
Authors:Miyazaki, T, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2014-11-05
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8.
J.Struct.Biol., 190, 2015
5CA3
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BU of 5ca3 by Molmil
Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose
Descriptor: CALCIUM ION, Glucosidase YgjK, MAGNESIUM ION, ...
Authors:Miyazaki, T, Tonozuka, T.
Deposit date:2015-06-29
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the enzyme-product complex reveals sugar ring distortion during catalysis by family 63 inverting alpha-glycosidase.
J.Struct.Biol., 2016
4XPO
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BU of 4xpo by Molmil
Crystal structure of a novel alpha-galactosidase from Pedobacter saltans
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-glucosidase
Authors:Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2015-01-17
Release date:2015-05-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31
Biochem.J., 469, 2015
4XPR
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BU of 4xpr by Molmil
Crystal structure of the mutant D365A of Pedobacter saltans GH31 alpha-galactosidase
Descriptor: 1,2-ETHANEDIOL, Alpha-glucosidase
Authors:Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2015-01-17
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31
Biochem.J., 469, 2015
4XPP
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BU of 4xpp by Molmil
Crystal structure of Pedobacter saltans GH31 alpha-galactosidase complexed with D-galactose
Descriptor: 1,2-ETHANEDIOL, Alpha-glucosidase, beta-D-galactopyranose
Authors:Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2015-01-17
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31
Biochem.J., 469, 2015
4XPQ
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BU of 4xpq by Molmil
Crystal structure of Pedobacter saltans GH31 alpha-galactosidase complexed with L-fucose
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-glucosidase, ...
Authors:Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2015-01-17
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31
Biochem.J., 469, 2015
4XPS
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BU of 4xps by Molmil
Crystal structure of the mutant D365A of Pedobacter saltans GH31 alpha-galactosidase complexed with p-nitrophenyl-alpha-galactopyranoside
Descriptor: 1,2-ETHANEDIOL, Alpha-glucosidase, P-NITROPHENOL, ...
Authors:Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T.
Deposit date:2015-01-17
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31
Biochem.J., 469, 2015
7XTL
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BU of 7xtl by Molmil
Crystal structure of the C-terminal domain of human N-acetylglucosaminyltransferase IVa
Descriptor: Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form
Authors:Miyazaki, T, Oka, N, Mori, S.
Deposit date:2022-05-17
Release date:2022-09-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.972 Å)
Cite:Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
7XTN
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BU of 7xtn by Molmil
Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV in complex with N-acetylglucosamine
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, N-acetylglucosaminyltransferase IV
Authors:Miyazaki, T, Oka, N, Mori, S.
Deposit date:2022-05-17
Release date:2022-09-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
7XTM
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BU of 7xtm by Molmil
Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, N-acetylglucosaminyltransferase IV
Authors:Miyazaki, T, Oka, N, Mori, S.
Deposit date:2022-05-17
Release date:2022-09-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
5ZOH
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BU of 5zoh by Molmil
Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin
Descriptor: BILIVERDINE IX ALPHA, GLYCEROL, Methyl-accepting chemotaxis protein
Authors:Miyazaki, T, Fushimi, K, Narikawa, R.
Deposit date:2018-04-13
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6LGD
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BU of 6lgd by Molmil
Bombyx mori GH13 sucrose hydrolase complexed with 1,4-dideoxy-1,4-imino-D-arabinitol
Descriptor: 1,4-DIDEOXY-1,4-IMINO-D-ARABINITOL, CALCIUM ION, GLYCEROL, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGH
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BU of 6lgh by Molmil
Bombyx mori GH13 sucrose hydrolase mutant E322Q covalent intermediate
Descriptor: CALCIUM ION, MAGNESIUM ION, Sucrose hydrolase, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGA
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Bombyx mori GH13 sucrose hydrolase
Descriptor: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGG
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BU of 6lgg by Molmil
Bombyx mori GH13 sucrose hydrolase mutant E322Q complexed with sucrose
Descriptor: CALCIUM ION, MAGNESIUM ION, Sucrose hydrolase, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGI
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BU of 6lgi by Molmil
Bombyx mori GH13 sucrose hydrolase mutant E322Q covalent intermediate complexed with fructose
Descriptor: ACETATE ION, CALCIUM ION, MAGNESIUM ION, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGC
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BU of 6lgc by Molmil
Bombyx mori GH13 sucrose hydrolase complexed with 1-deoxynojirimycin
Descriptor: 1-DEOXYNOJIRIMYCIN, CALCIUM ION, GLYCEROL, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGE
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Bombyx mori GH13 sucrose hydrolase complexed with acarbose
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, CALCIUM ION, MAGNESIUM ION, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGB
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Bombyx mori GH13 sucrose hydrolase complexed with glucose
Descriptor: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020
6LGF
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Bombyx mori GH13 sucrose hydrolase mutant D247N complexed with sucrose
Descriptor: CALCIUM ION, MAGNESIUM ION, Sucrose hydrolase, ...
Authors:Miyazaki, T.
Deposit date:2019-12-05
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295, 2020

 

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