5ZOH

Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin

Summary for 5ZOH

Related3W2Z
DescriptorMethyl-accepting chemotaxis protein, BILIVERDINE IX ALPHA, GLYCEROL, ... (4 entities in total)
Functional Keywordsphotoreceptor, cyanobacteriochrome, complex, tetrapyrrole, biliverdin, signaling protein
Biological sourceNostoc sp.
Total number of polymer chains1
Total molecular weight23316.22
Authors
Miyazaki, T.,Fushimi, K.,Narikawa, R. (deposition date: 2018-04-13, release date: 2019-04-17, Last modification date: 2019-05-08)
Primary citation
Fushimi, K.,Miyazaki, T.,Kuwasaki, Y.,Nakajima, T.,Yamamoto, T.,Suzuki, K.,Ueda, Y.,Miyake, K.,Takeda, Y.,Choi, J.H.,Kawagishi, H.,Park, E.Y.,Ikeuchi, M.,Sato, M.,Narikawa, R.
Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin.
Proc. Natl. Acad. Sci. U.S.A., 116:8301-8309, 2019
PubMed: 30948637 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1818836116
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.6 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.251400 12.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5zoh
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Molmil generated image of 5zoh
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Molmil generated image of 5zoh
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More Biological unit images

Molmil generated image of 5zoh
no rotation
Molmil generated image of 5zoh
rotated about x axis by 90°
Molmil generated image of 5zoh
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5zoh.pdb2.gz [64.25 KB])
Coordinate files for Biological unit (5zoh.pdb1.gz [33.12 KB])