PDB: 224931 件ウェブページステータス検索Chemie searchBIRD

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4R2H	The Crystal Structure of B204, the DNA-packaging ATPase from Sulfolobus Turreted Icosahedral Virus 分子名称: STIV B204 ATPase, ZINC ION 著者 Dellas, N, Nicolay, S.J, Young, M.J. 登録日 2014-08-12 公開日 2016-01-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase. J.Virol., 90, 2015
4RHA	Structure of the C-terminal domain of outer-membrane protein OmpA from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, Outer membrane protein A, ... 著者 Cuff, M.E, Skarina, T, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2014-10-01 公開日 2014-10-29 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Insights into PG-binding, conformational change, and dimerization of the OmpA C-terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferi. Protein Sci., 26, 2017
4RJF	Crystal structure of the human sliding clamp at 2.0 angstrom resolution 分子名称: Cyclin-dependent kinase inhibitor 1, Proliferating cell nuclear antigen 著者 Kroker, A.J, Bruning, J.B. 登録日 2014-10-09 公開日 2015-08-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.0072 Å) 主引用文献 p21 Exploits Residue Tyr151 as a Tether for High-Affinity PCNA Binding. Biochemistry, 54, 2015
4RWV	Crystal structure of PIP3 bound human nuclear receptor LRH-1 (Liver Receptor Homolog 1, NR5A2) in complex with a co-regulator DAX-1 (NR0B1) peptide at 1.86 A resolution 分子名称: (2S)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dihexadecanoate, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL) 登録日 2014-12-05 公開日 2015-01-21 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.859 Å) 主引用文献 Crystal structure of a Homo sapiens hepatocytic transcription factor hB1F-2 (B1F2) in complex with nuclear receptor subfamily 0 group B member 1 (NR0B1, residues 140-154) from human at 1.86 A resolution To be published
4RX6	Structure of B. subtilis GlnK-ATP complex to 2.6 Angstrom 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Nitrogen regulatory PII-like protein 著者 Schumacher, M.A, Cuthbert, B, Tonthat, N, Chinnam, N.G, Whitfill, T. 登録日 2014-12-09 公開日 2015-12-30 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5994 Å) 主引用文献 Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis. Genes Dev., 29, 2015
4RKL	Crystal structure of Staphylococcal nuclease variant Delta+PHS V23T/V66T at cryogenic temperature 分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease 著者 Caro, J.A, Mercedes, R, Schlessman, J.L, Garcia-Moreno E, B. 登録日 2014-10-13 公開日 2014-11-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Cavities in proteins to be published
5NJX	Human FKBP51 protein in complex with C-terminal peptide of Human HSP 90-alpha 分子名称: HSP90AA1 protein, Peptidyl-prolyl cis-trans isomerase FKBP5, SULFATE ION 著者 Kumar, R, Moche, M, Winblad, B, Pavlov, P. 登録日 2017-03-30 公開日 2017-11-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Combined x-ray crystallography and computational modeling approach to investigate the Hsp90 C-terminal peptide binding to FKBP51. Sci Rep, 7, 2017
4RVO	Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.41 A resolution 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2014-11-26 公開日 2014-12-31 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (2.41 Å) 主引用文献 Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.41 A resolution To be published
4RU2	Crystal structure of a RNA-binding protein 39 (RBM39) in complex with fragment of splicing factor (U2AF) from Mus musculus at 2.20 A resolution 分子名称: RNA-binding protein 39 (RBM39), Splicing factor U2AF 65 kDa subunit 著者 Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) 登録日 2014-11-17 公開日 2015-02-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of a RNA-binding protein 39 (RBM39) in complex with fragment of splicing factor (U2AF) from Mus musculus at 2.20 A resolution To be published
8CPW	Human apoferritin after 405 nm + 488 nm laser exposure in presence of rsEGFP2 分子名称: Ferritin heavy chain, N-terminally processed, MAGNESIUM ION, ... 著者 Last, M.G.F, Noteborn, W.E.M, Sharp, T.H. 登録日 2023-03-03 公開日 2023-03-15 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (1.79 Å) 主引用文献 Super-resolution fluorescence imaging of cryosamples does not limit achievable resolution in cryoEM. J.Struct.Biol., 215, 2023
6TEM	CENP-A nucleosome core particle with 145 base pairs of the Widom 601 sequence by cryo-EM 分子名称: Histone H2A, Histone H2B 1.1, Histone H3-like centromeric protein A, ... 著者 Boopathi, R, Danev, R, Petosa, C, Bednar, J. 登録日 2019-11-12 公開日 2020-04-08 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends. Nucleic Acids Res., 48, 2020
6TGB	CryoEM structure of the binary DOCK2-ELMO1 complex 分子名称: Dedicator of cytokinesis protein 2, Engulfment and cell motility protein 1 著者 Chang, L, Yang, J, Chang, J.H, Zhang, Z, Boland, A, McLaughlin, S.H, Abu-Thuraia, A, Killoran, R.C, Smith, M.J, Cote, J.F, Barford, D. 登録日 2019-11-15 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (5.5 Å) 主引用文献 Structure of the DOCK2-ELMO1 complex provides insights into regulation of the auto-inhibited state. Nat Commun, 11, 2020
8CKA	Deinococcus radidurans HPI S-layer 分子名称: Hexagonally packed intermediate-layer surface protein 著者 von Kuegelgen, A, Yamashita, K, Murshudov, G, Bharat, T. 登録日 2023-02-14 公開日 2023-04-19 最終更新日 2023-04-26 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 Interdigitated immunoglobulin arrays form the hyperstable surface layer of the extremophilic bacterium Deinococcus radiodurans. Proc.Natl.Acad.Sci.USA, 120, 2023
8C7G	Drosophila melanogaster Rab7 GEF complex Mon1-Ccz1-Bulli 分子名称: Caffeine, calcium, zinc sensitivity 1, ... 著者 Schaefer, J, Herrmann, E, Kuemmel, D, Moeller, A. 登録日 2023-01-15 公開日 2023-05-17 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of the metazoan Rab7 GEF complex Mon1-Ccz1-Bulli. Proc.Natl.Acad.Sci.USA, 120, 2023
8C83	Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11-A, ... 著者 Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2023-01-18 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
6T9J	SAGA Tra1 module 分子名称: Transcription factor SPT20, Transcription initiation factor TFIID subunit 12, Transcription-associated protein 1 著者 Wang, H, Cheung, A, Cramer, P. 登録日 2019-10-28 公開日 2020-01-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the transcription coactivator SAGA. Nature, 577, 2020
8BWY	In situ outer dynein arm from Chlamydomonas reinhardtii in a pre-power stroke state 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Calmodulin, ... 著者 Zimmermann, N.E.L, Noga, A, Obbineni, J.M, Ishikawa, T. 登録日 2022-12-07 公開日 2023-05-10 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (38 Å) 主引用文献 ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography. Embo J., 42, 2023
6T89	Thrombin in complex with (S)-N-(tert-butyl)-4-(3-(3-carbamimidoylphenyl)-2-((2',4'-dimethoxy-[1,1'-biphenyl])-3-sulfonamido)propanoyl)piperazine-1-carboxamide (MI-498) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[(2~{S})-3-(3-carbamimidoylphenyl)-2-[[3-(4-methoxy-2-oxidanyl-phenyl)phenyl]sulfonylamino]propanoyl]-~{N}-methyl-piperazine-1-carboxamide, DIMETHYL SULFOXIDE, ... 著者 Ngaha, S.A, Sandner, A, Huber, S, Heine, A, Steinmetzer, T, Pilgram, O. 登録日 2019-10-24 公開日 2020-11-18 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Improving the selectivity of 3-amidinophenylalanine-derived matriptase inhibitors Eur.J.Med.Chem., 2022
8BX8	In situ outer dynein arm from Chlamydomonas reinhardtii in the post-power stroke state 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ... 著者 Zimmermann, N.E.L, Noga, A, Obbineni, J.M, Ishikawa, T. 登録日 2022-12-08 公開日 2023-05-10 最終更新日 2023-06-28 実験手法 ELECTRON MICROSCOPY (30.299999 Å) 主引用文献 ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography. Embo J., 42, 2023
6T8A	Thrombin in complex with diphenyl ((4-carbamimidoylphenyl)((S)-1-((R)-3-cyclohexyl 2-((phenylmethyl)sulfonamido)propanoyl)pyrrolidine-2-carboxamido)methyl)phosphonate (MI-492) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, Hirudin variant-2, ... 著者 Ngaha, S.A, Sandner, A, Huber, S, Heine, A, Steinmetzer, T, Pilgram, O. 登録日 2019-10-24 公開日 2020-11-18 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Thrombin in complex with diphenyl ((4-carbamimidoylphenyl)((S)-1-((R)-3-cyclohexyl-2-((phenylmethyl)sulfonamido)propanoyl)pyrrolidine-2-carboxamido)methyl)phosphonate (MI-492) to be published
8CLR	Integrated NMR/MD structure determination of a dynamic and thermodynamically stable CUUG RNA tetraloop 分子名称: RNA hairpin with CUUG tetraloop 著者 Oxenfarth, A, Kuemmerer, F, Bottaro, S, Schnieders, R, Pinter, G, Jonker, H.R.A, Fuertig, B, Richter, C, Blackledge, M, Lindorff-Larsen, K, Schwalbe, H. 登録日 2023-02-17 公開日 2023-07-19 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop. J.Am.Chem.Soc., 145, 2023
6TF9	Structure of the vertebrate gamma-Tubulin Ring Complex 分子名称: Actin, cytoplasmic 1, Belt helices 1,2,3,4, ... 著者 Zupa, E, Pfeffer, S. 登録日 2019-11-13 公開日 2019-12-11 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Insights into the assembly and activation of the microtubule nucleator gamma-TuRC. Nature, 578, 2020
8CPE	CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient. 分子名称: Immunoglobulin lambda light chain 著者 Puri, S, Schulte, T, Chaves-Sanjuan, A, Ricagno, S. 登録日 2023-03-02 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 The Cryo-EM STRUCTURE of Renal Amyloid Fibril Suggests Structurally Homogeneous Multiorgan Aggregation in AL Amyloidosis. J.Mol.Biol., 435, 2023
8CDL	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-31 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-31 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024

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