PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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1D17	DNA-NOGALAMYCIN INTERACTIONS 分子名称: DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3'), NOGALAMYCIN 著者 Egli, M, Williams, L.D, Frederick, C.A, Rich, A. 登録日 1990-08-08 公開日 1991-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNA-nogalamycin interactions. Biochemistry, 30, 1991
4CRO	PROTEIN-DNA CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURE OF A LAMBDA CRO-OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*TP*CP*AP*CP*CP*GP*CP*GP*GP*GP*TP*GP*AP*TP*A)-3'), PROTEIN (LAMBDA CRO) 著者 Brennan, R.G, Roderick, S.L, Takeda, Y, Matthews, B.W. 登録日 1992-01-15 公開日 1992-01-15 最終更新日 2022-11-23 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complex. Proc.Natl.Acad.Sci.USA, 87, 1990
7M5O	Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA 分子名称: CasPhi, ZINC ION, crRNA 著者 Pausch, P, Soczek, K, Nogales, E, Doudna, J. 登録日 2021-03-24 公開日 2021-08-04 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 DNA interference states of the hypercompact CRISPR-Cas Phi effector. Nat.Struct.Mol.Biol., 28, 2021
3U6F	Mouse TREX1 D200N mutant 分子名称: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', MAGNESIUM ION, ... 著者 Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. 登録日 2011-10-12 公開日 2011-12-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
5GUJ	Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG 分子名称: DNA primase 著者 Zhou, Y, Liu, Z, Wang, G. 登録日 2016-08-29 公開日 2017-04-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria Sci Rep, 7, 2017
3U3Y	Mouse TREX1 D200H mutant 分子名称: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', CALCIUM ION, ... 著者 Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. 登録日 2011-10-06 公開日 2011-12-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
6CBR	DnaG Primase C-terminal domain complex with SSB C-terminal peptide 分子名称: DNA primase,single-stranded DNA-binding protein chimera 著者 Oakley, A.J, Lo, A.T.Y. 登録日 2018-02-05 公開日 2019-02-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 DnaG Primase C-terminal domain complex with SSB C-terminal peptide To be Published
4NRV	Crystal Structure of non-edited human NEIL1 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endonuclease 8-like 1 著者 Prakash, A, Doublie, S. 登録日 2013-11-27 公開日 2014-01-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.601 Å) 主引用文献 Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing. Dna Repair, 14, 2014
8BZU	Double-ion dependent DNA quadruplex structure formed by C.elegans telomeric sequence 分子名称: DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*C)-3') 著者 Lenarcic Zivkovic, M, Trantirek, L. 登録日 2022-12-15 公開日 2024-03-13 実験手法 SOLUTION NMR 主引用文献 DNA Quadruplex Structure with a Unique Cation Dependency. Angew.Chem.Int.Ed.Engl., 63, 2024
3KUY	DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent 分子名称: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ... 著者 Wu, B, Davey, C.A. 登録日 2009-11-28 公開日 2010-01-05 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent Nucleic Acids Res., 38, 2010
1PAR	DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE 分子名称: DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3'), PROTEIN (ARC REPRESSOR) 著者 Raumann, B.E, Rould, M.A, Pabo, C.O, Sauer, R.T. 登録日 1994-03-22 公開日 1994-07-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 DNA recognition by beta-sheets in the Arc repressor-operator crystal structure. Nature, 367, 1994
5W35	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 1-nucleotide overhang 分子名称: DNA primase, synthetic DNA oligomer 5'-CCACTTCCGGTC, synthetic DNA oligomer 5'-TGACCGGAAGTGG 著者 Hou, C, Tsodikov, O.V. 登録日 2017-06-07 公開日 2018-03-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.31 Å) 主引用文献 Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
6FFR	DNA-RNA Hybrid Quadruplex with Flipped Tetrad 分子名称: DNA/RNA (5'-R(*G)-D(P*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*C)-R(P*G)-D(P*GP*G)-3') 著者 Haase, L, Dickerhoff, J, Weisz, K. 登録日 2018-01-09 公開日 2018-09-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies. Chemistry, 24, 2018
5W34	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with double-stranded DNA GACCGGAAGTGG 分子名称: DNA oligomer 5'-CCACTTCCGGTC, DNA oligomer 5'-GACCGGAAGTGG, DNA primase 著者 Hou, C, Tsodikov, O.V. 登録日 2017-06-07 公開日 2018-03-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W36	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 6-nucleotide overhang 分子名称: DNA primase, STRONTIUM ION, synthetic DNA 5'-TATCGTCCCGCCTC 著者 Hou, C, Tsodikov, O.V. 登録日 2017-06-07 公開日 2018-03-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W33	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG 分子名称: DNA primase, SULFATE ION 著者 Hou, C, Biswas, T, Tsodikov, O.V. 登録日 2017-06-07 公開日 2018-03-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5E50	APLF/XRCC4 complex 分子名称: Aprataxin and PNK-like factor, MAGNESIUM ION, XRCC4 著者 Cherry, A.L, Smerdon, S.J. 登録日 2015-10-07 公開日 2015-11-18 実験手法 X-RAY DIFFRACTION (1.376 Å) 主引用文献 Versatility in phospho-dependent molecular recognition of the XRCC1 and XRCC4 DNA-damage scaffolds by aprataxin-family FHA domains. DNA Repair (Amst.), 35, 2015
122D	DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR 分子名称: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') 著者 Hahn, M, Heinemann, U. 登録日 1993-05-03 公開日 1993-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR. Acta Crystallogr.,Sect.D, 49, 1993
123D	DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR 分子名称: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') 著者 Hahn, M, Heinemann, U. 登録日 1993-05-03 公開日 1993-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR. Acta Crystallogr.,Sect.D, 49, 1993
2DNJ	DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', ... 著者 Lahm, A, Suck, D. 登録日 1986-10-21 公開日 1994-01-31 最終更新日 2020-10-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex J.Mol.Biol., 222, 1991
182D	DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN 分子名称: DNA (5'-D(*TP*GP*AP*TP*CP*A)-3'), NOGALAMYCIN 著者 Smith, C.K, Davies, G.J, Dodson, E.J, Moore, M.H. 登録日 1994-07-28 公開日 1994-11-30 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin. Biochemistry, 34, 1995
8T1U	Crystal structure of the DRM2-CTA DNA complex 分子名称: DNA (5'-D(P*AP*TP*TP*AP*TP*TP*AP*AP*TP*(C49)P*TP*AP*AP*AP*TP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*AP*TP*TP*TP*AP*GP*AP*TP*TP*AP*AP*TP*AP*AP*T)-3'), DNA (cytosine-5)-methyltransferase DRM2, ... 著者 Chen, J, Lu, J, Song, J. 登録日 2023-06-03 公開日 2023-11-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2. J.Biol.Chem., 299, 2023
6GDR	DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases 分子名称: ADENOSINE MONOPHOSPHATE, DNA, DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ... 著者 Williamson, A, Grigic, M, Leiros, H.K.S. 登録日 2018-04-24 公開日 2018-07-25 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases. Nucleic Acids Res., 46, 2018
104D	DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN 分子名称: DNA/RNA (5'-R(*CP*GP*CP*G)-D(P*TP*AP*TP*AP*CP*GP*CP*G)-3') 著者 Zhu, L, Salazar, M, Reid, B.R. 登録日 1994-12-16 公開日 1995-03-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2. Biochemistry, 34, 1995
1DA9	ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL 分子名称: DNA (5'-D(*TP*GP*GP*CP*CP*A)-3'), DOXORUBICIN 著者 Leonard, G.A, Hambley, T.W, McAuley-Hecht, K, Brown, T, Hunter, W.N. 登録日 1993-01-21 公開日 1993-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. Acta Crystallogr.,Sect.D, 49, 1993

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