PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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2C7C	FITTED COORDINATES FOR GROEL-ATP7-GROES CRYO-EM COMPLEX (EMD-1180) 分子名称: 10 KDA CHAPERONIN MOLECULE: GROES, PROTEIN CPN10, GROES PROTEIN, ... 著者 Ranson, N.A, Clare, D.K, Farr, G.W, Houldershaw, D, Horwich, A.L, Saibil, H.R. 登録日 2005-11-22 公開日 2006-01-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Allosteric Signalling of ATP Hydrolysis in Groel-Groes Complexes. Nat.Struct.Mol.Biol., 13, 2006
6T59	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Lin, Z, Gasic, I, Chandrasekaran, V, Peters, N, Shao, S, Ramakrishnan, V, Mitchison, T.J, Hegde, R.S. 登録日 2019-10-15 公開日 2019-11-27 最終更新日 2020-01-15 実験手法 ELECTRON MICROSCOPY (3.11 Å) 主引用文献 TTC5 mediates autoregulation of tubulin via mRNA degradation. Science, 367, 2020
5NFV	Crystal structure of catalytically inactive FnCas12 mutant bound to an R-loop structure containing a pre-crRNA mimic and full-length DNA target 分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CRISPR-associated endonuclease Cpf1, DNA non-target strand, ... 著者 Swarts, D.C, van der Oost, J, Jinek, M. 登録日 2017-03-16 公開日 2017-06-14 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a. Mol. Cell, 66, 2017
5NJT	Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Beckert, B, Abdelshahid, M, Schaefer, H, Steinchen, W, Arenz, S, Berninghausen, O, Beckmann, R, Bange, G, Turgay, K, Wilson, D.N. 登録日 2017-03-29 公開日 2017-06-14 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. EMBO J., 36, 2017
5ZJI	Structure of photosystem I supercomplex with light-harvesting complexes I and II 分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... 著者 Pan, X.W, Ma, J, Su, X.D, Cao, P, Liu, Z.F, Zhang, X.Z, Li, M. 登録日 2018-03-20 公開日 2018-06-20 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II. Science, 360, 2018
6TMF	Structure of an archaeal ABCE1-bound ribosomal post-splitting complex 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Kratzat, H, Becker, T, Tampe, R, Beckmann, R. 登録日 2019-12-04 公開日 2020-02-12 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex. Embo J., 39, 2020
3REK	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin 分子名称: DNA (146-MER), Histone H2A type1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
2VQF	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Kurata, S, Weixlbaumer, A, Ohtsuki, T, Shimazaki, T, Wada, T, Kirino, Y, Takai, K, Watanabe, K, Ramakrishnan, V, Suzuki, T. 登録日 2008-03-14 公開日 2008-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding. J.Biol.Chem., 283, 2008
2VV5	The open structure of MscS 分子名称: SMALL-CONDUCTANCE MECHANOSENSITIVE CHANNEL 著者 Wang, W, Dong, C, Johnson, K.A, Naismith, J.H. 登録日 2008-06-03 公開日 2008-08-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 The Structure of an Open Form of an E. Coli Mechanosensitive Channel at 3.45 A Resolution. Science, 321, 2008
5O2R	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Berninghausen, O, Beckmann, R, Wilson, D.N. 登録日 2017-05-22 公開日 2017-07-26 最終更新日 2019-02-20 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 An antimicrobial peptide that inhibits translation by trapping release factors on the ribosome. Nat. Struct. Mol. Biol., 24, 2017
5O9Z	Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), ... 著者 Bertram, K, Kastner, B. 登録日 2017-06-20 公開日 2017-08-16 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation. Cell, 170, 2017
2VQE	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Kurata, S, Weixlbaumer, A, Ohtsuki, T, Shimazaki, T, Wada, T, Kirino, Y, Takai, K, Watanabe, K, Ramakrishnan, V, Suzuki, T. 登録日 2008-03-13 公開日 2008-04-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding. J.Biol.Chem., 283, 2008
5OK6	Ubiquitin specific protease 11 USP11 - peptide F complex 分子名称: 1,2-ETHANEDIOL, ALA-GLU-GLY-GLU-PHE-TYR-LYS-LEU-LYS-ILE-ARG-THR-PRO-AAR, GLYCEROL, ... 著者 Spiliotopoulos, A, Dreveny, I. 登録日 2017-07-25 公開日 2018-08-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Discovery of peptide ligands targeting a specific ubiquitin-like domain-binding site in the deubiquitinase USP11. J.Biol.Chem., 294, 2019
6TEM	CENP-A nucleosome core particle with 145 base pairs of the Widom 601 sequence by cryo-EM 分子名称: Histone H2A, Histone H2B 1.1, Histone H3-like centromeric protein A, ... 著者 Boopathi, R, Danev, R, Petosa, C, Bednar, J. 登録日 2019-11-12 公開日 2020-04-08 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends. Nucleic Acids Res., 48, 2020
5XYU	Small subunit of Mycobacterium smegmatis ribosome 分子名称: 16S RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Li, Z, Zhang, Y, Zheng, L, Ge, X, Sanyal, S, Gao, N. 登録日 2017-07-10 公開日 2017-09-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers. Protein Cell, 9, 2018
5OE6	Crystal structure of the N-terminal domain of PqsA in complex with 6-fluoroanthraniloyl-AMP (crystal form 1) 分子名称: 6-fluoroanthraniloyl-AMP, Anthranilate--CoA ligase, TRIETHYLENE GLYCOL 著者 Witzgall, F, Ewert, W, Blankenfeldt, W. 登録日 2017-07-07 公開日 2017-09-06 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Structures of the N-Terminal Domain of PqsA in Complex with Anthraniloyl- and 6-Fluoroanthraniloyl-AMP: Substrate Activation in Pseudomonas Quinolone Signal (PQS) Biosynthesis. Chembiochem, 18, 2017
5XYM	Large subunit of Mycobacterium smegmatis 分子名称: 23S RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Li, Z, Ge, X, Zhang, Y, Zheng, L, Sanyal, S, Gao, N. 登録日 2017-07-09 公開日 2017-09-27 最終更新日 2018-04-11 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers. Protein Cell, 9, 2018
4D61	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state 分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Muhs, M, Hilal, T, Mielke, T, Skabkin, M.A, Sanbonmatsu, K.Y, Pestova, T.V, Spahn, C.M.T. 登録日 2014-11-07 公開日 2015-03-04 最終更新日 2017-08-30 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires. Mol.Cell, 57, 2015
3REJ	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) 分子名称: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
5OOL	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA 分子名称: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Brown, A, Rathore, S, Kimanius, D, Aibara, S, Bai, X.C, Rorbach, J, Amunts, A, Ramakrishnan, V. 登録日 2017-08-08 公開日 2017-09-13 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (3.06 Å) 主引用文献 Structures of the human mitochondrial ribosome in native states of assembly. Nat. Struct. Mol. Biol., 24, 2017
6BCX	mTORC1 structure refined to 3.0 angstroms 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, MAGNESIUM ION, ... 著者 Pavletich, N.P, Yang, H. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40. Nature, 552, 2017
6BCU	Cryo-EM structure of the activated RHEB-mTORC1 refined to 3.4 angstrom 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, GTP-binding protein Rheb, ... 著者 Pavletich, N.P, Yang, H. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40. Nature, 552, 2017
2AWI	Structure of PrgX Y153C mutant 分子名称: PrgX 著者 Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.k, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A. 登録日 2005-09-01 公開日 2005-12-06 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis. Proc.Natl.Acad.Sci.Usa, 102, 2005
6V8O	RSC core 分子名称: Chromatin structure-remodeling complex protein RSC14, Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex protein RSC30, ... 著者 Patel, A.B, Moore, C.M, Greber, B.J, Nogales, E. 登録日 2019-12-11 公開日 2020-01-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife, 8, 2019
3REL	2.7 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Triamminechloroplatinum(II) Chloride 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011

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