PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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4AQY	Structure of ribosome-apramycin complexes 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Matt, T, Ng, C.L, Lang, K, Sha, S.H, Akbergenov, R, Shcherbakov, D, Meyer, M, Duscha, S, Xie, J, Dubbaka, S.R, Perez-Fernandez, D, Vasella, A, Ramakrishnan, V, Schacht, J, Bottger, E.C. 登録日 2012-04-20 公開日 2012-07-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Dissociation of Antibacterial Activity and Aminoglycoside Ototoxicity in the 4-Monosubstituted 2-Deoxystreptamine Apramycin. Proc.Natl.Acad.Sci.USA, 109, 2012
4AFL	The crystal structure of the ING4 dimerization domain reveals the functional organization of the ING family of chromatin binding proteins. 分子名称: INHIBITOR OF GROWTH PROTEIN 4 著者 Culurgioni, S, Munoz, I.G, Moreno, A, Palacios, A, Villate, M, Palmero, I, Montoya, G, Blanco, F.J. 登録日 2012-01-19 公開日 2012-02-22 最終更新日 2012-07-11 実験手法 X-RAY DIFFRACTION (2.275 Å) 主引用文献 Crystal Structure of Inhibitor of Growth 4 (Ing4) Dimerization Domain Reveals Functional Organization of Ing Family of Chromatin-Binding Proteins. J.Biol.Chem., 287, 2012
2RHB	Crystal structure of Nsp15-H234A mutant- Hexamer in asymmetric unit 分子名称: Uridylate-specific endoribonuclease 著者 Palaninathan, S, Bhardwaj, K, Alcantara, J.M.O, Guarino, L, Yi, L.L, Kao, C.C, Sacchettini, J. 登録日 2007-10-08 公開日 2007-11-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural and functional analyses of the severe acute respiratory syndrome coronavirus endoribonuclease Nsp15. J.Biol.Chem., 283, 2008
5NPW	Structure of human ATG5-ATG16L1(ATG5BD) complex (C2) 分子名称: Autophagy protein 5, Autophagy-related protein 16-1 著者 Archna, A, Scrima, A. 登録日 2017-04-19 公開日 2017-10-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Identification, biochemical characterization and crystallization of the central region of human ATG16L1. Acta Crystallogr F Struct Biol Commun, 73, 2017
6U72	BRD4-BD1 in complex with the cyclic peptide 3.1_2_AcK5toA 分子名称: 3.1_2_AcK5toA, AMINO GROUP, Bromodomain-containing protein 4 著者 Patel, K, Walshe, J.L, Walport, L.J, Mackay, J.P, Mouradian, K.S. 登録日 2019-08-31 公開日 2020-08-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Cyclic peptides can engage a single binding pocket through highly divergent modes. Proc.Natl.Acad.Sci.USA, 117, 2020
5NSR	Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Glyde, R, Ye, F.Z, Darbari, V.C, Zhang, N, Buck, M, Zhang, X.D. 登録日 2017-04-26 公開日 2017-06-28 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation. Mol. Cell, 67, 2017
5NWY	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Su, T, Cheng, J, Sohmen, D, Hedman, R, Berninghausen, O, von Heijne, G, Wilson, D.N, Beckmann, R. 登録日 2017-05-08 公開日 2017-07-19 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling. Elife, 6, 2017
5ZGH	Cryo-EM structure of the red algal PSI-LHCR 分子名称: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (2S)-2,3-dihydroxypropyl octadecanoate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... 著者 Pi, X. 登録日 2018-03-09 公開日 2018-04-11 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.82 Å) 主引用文献 Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZG	The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Zhan, X, Yan, C, Zhang, X, Lei, J, Shi, Y. 登録日 2017-12-14 公開日 2018-08-08 最終更新日 2020-10-14 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structure of a human catalytic step I spliceosome Science, 359, 2018
5ZGB	Cryo-EM structure of the red algal PSI-LHCR 分子名称: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (2S)-2,3-dihydroxypropyl octadecanoate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... 著者 Pi, X. 登録日 2018-03-08 公開日 2018-04-25 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.63 Å) 主引用文献 Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NSS	Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta', ... 著者 Glyde, R, Ye, F.Z, Darbari, V.C, Zhang, N, Buck, M, Zhang, X.D. 登録日 2017-04-26 公開日 2017-06-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation. Mol. Cell, 67, 2017
6UH5	Structural basis of COMPASS eCM recognition of the H2Bub nucleosome 分子名称: Bre2, DNA (146-MER), H3 N-terminus, ... 著者 Hsu, P.L, Shi, H, Zheng, N. 登録日 2019-09-26 公開日 2019-11-20 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS. Mol.Cell, 76, 2019
4ADX	The Cryo-EM Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6 分子名称: 23S Ribosomal RNA EXPANSION SEGMENTS, 23S ribosomal RNA, 5S Ribosomal RNA, ... 著者 Greber, B.J, Boehringer, D, Godinic-Mikulcic, V, Crnkovic, A, Ibba, M, Weygand-Durasevic, I, Ban, N. 登録日 2012-01-04 公開日 2012-02-08 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Cryo-Em Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6 and Implications for Ribosome Evolution J.Mol.Biol., 418, 2012
6ULQ	BRD2-BD1 in complex with the cyclic peptide 4.2_3 分子名称: Bromodomain-containing protein 2, Cyclic peptide 4.2_3 著者 Patel, K, Walshe, J.L, Walport, L.J, Mackay, J.P. 登録日 2019-10-08 公開日 2020-08-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Cyclic peptides can engage a single binding pocket through highly divergent modes. Proc.Natl.Acad.Sci.USA, 117, 2020
6UKI	HhaI endonuclease in Complex with DNA in space group P212121 (pH 6.0) 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*CP*TP*GP*TP*TP*GP*CP*GP*CP*TP*TP*GP*GP*A)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2019-10-04 公開日 2019-12-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom. Nucleic Acids Res., 48, 2020
2V0W	N- and C-terminal helices of oat LOV2 (404-546) are involved in light- induced signal transduction (cryo-trapped light structure of LOV2 (404-546)) 分子名称: FLAVIN MONONUCLEOTIDE, GLYCEROL, NPH1-1 著者 Halavaty, A.S, Moffat, K. 登録日 2007-05-20 公開日 2007-12-11 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. Biochemistry, 46, 2007
4B2D	human PKM2 with L-serine and FBP bound. 分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, PYRUVATE KINASE ISOZYMES M1/M2, ... 著者 Chaneton, B, Hillmann, P, Zheng, L, Martin, A.C.L, Maddocks, O.D.K, Chokkathukalam, A, Coyle, J.E, Jankevics, A, Holding, F.P, Vousden, K.H, Frezza, C, O'Reilly, M, Gottlieb, E. 登録日 2012-07-13 公開日 2012-10-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Serine is a natural ligand and allosteric activator of pyruvate kinase M2. Nature, 491, 2012
5ZWO	Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom 分子名称: 13 kDa ribonucleoprotein-associated protein, 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component, 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component, ... 著者 Bai, R, Wan, R, Yan, C, Shi, Y. 登録日 2018-05-16 公開日 2018-08-29 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structures of the fully assembledSaccharomyces cerevisiaespliceosome before activation Science, 360, 2018
6ULW	Adenylation, ketoreductase, and pseudo Asub multidomain structure of a keto acid-selecting NRPS module 分子名称: Amino acid adenylation domain-containing protein, CALCIUM ION, MAGNESIUM ION 著者 Alonzo, D.A, Wang, J, Chiche-Lapierre, C, Schmeing, T.M. 登録日 2019-10-08 公開日 2020-02-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis of keto acid utilization in nonribosomal depsipeptide synthesis. Nat.Chem.Biol., 16, 2020
2CGT	GROEL-ADP-gp31 COMPLEX 分子名称: 60 KDA GROEL, CAPSID ASSEMBLY PROTEIN GP31 著者 Clare, D.K, Bakkes, P.J, van Heerikhuizen, H, van der Vies, S.M, Saibil, H.R. 登録日 2006-03-09 公開日 2006-03-29 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.2 Å) 主引用文献 An Expanded Protein Folding Cage in the Groel-Gp31 Complex. J.Mol.Biol., 358, 2006
6SV4	The cryo-EM structure of SDD1-stalled collided trisome. 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Tesina, P, Buschauer, R, Cheng, J, Becker, T, Beckmann, R. 登録日 2019-09-17 公開日 2020-03-04 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1. Nat.Struct.Mol.Biol., 27, 2020
2C7E	REVISED ATOMIC STRUCTURE FITTING INTO A GROEL(D398A)-ATP7 CRYO-EM MAP (EMD 1047) 分子名称: 60 KDA CHAPERONIN, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Ranson, N.A, Farr, G.W, Roseman, A.M, Gowen, B, Fenton, W.A, Horwich, A.L, Saibil, H.R. 登録日 2005-11-22 公開日 2006-02-16 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (14.9 Å) 主引用文献 ATP-Bound States of Groel Captured by Cryo-Electron Microscopy Cell(Cambridge,Mass.), 107, 2001
6SW9	IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Coureux, P.-D, Mechulam, Y, Schmitt, E. 登録日 2019-09-20 公開日 2020-02-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol, 3, 2020
2C7D	Fitted coordinates for GroEL-ADP7-GroES Cryo-EM complex (EMD-1181) 分子名称: 10 KDA CHAPERONIN MOLECULE: GROES, PROTEIN CPN10, GROES PROTEIN, ... 著者 Ranson, N.A, Clare, D.K, Farr, G.W, Houldershaw, D, Horwich, A.L, Saibil, H.R. 登録日 2005-11-22 公開日 2006-01-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 Allosteric Signalling of ATP Hydrolysis in Groel-Groes Complexes. Nat.Struct.Mol.Biol., 13, 2006

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