PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

---

5DM7	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A 分子名称: 23S ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L11, ... 著者 Kaminishi, T, Schedlbauer, A, Ochoa-Lizarralde, B, Connell, S.R, Fucini, P. 登録日 2015-09-08 公開日 2015-11-11 最終更新日 2015-11-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A. Nucleic Acids Res., 43, 2015
5L9U	Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination 分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ... 著者 Brown, N.G, VanderLinden, R, Dube, P, Haselbach, D, Peters, J.M, Stark, H, Schulman, B.A. 登録日 2016-06-11 公開日 2016-09-14 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C. Cell, 165, 2016
8KD6	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD3	Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
6WGI	Atomic model of the mutant OCCM (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) loaded on DNA at 10.5 A resolution 分子名称: Cell division control protein 6, Cell division cycle protein CDT1, DNA (34-MER), ... 著者 Yuan, Z, Schneider, S, Dodd, T, Riera, A, Bai, L, Yan, C, Magdalou, I, Ivanov, I, Stillman, B, Li, H, Speck, C. 登録日 2020-04-05 公開日 2020-07-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proc.Natl.Acad.Sci.USA, 117, 2020
6WDL	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
5DNY	Structure of the ATPrS-Mre11/Rad50-DNA complex 分子名称: DNA (27-MER), DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase, DNA double-strand break repair protein Mre11, ... 著者 Liu, Y. 登録日 2015-09-10 公開日 2016-02-24 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex. Embo J., 35, 2016
6WDI	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
8KB5	Cryo-EM structure of the human nucleosome containing H3.8 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Hirai, H, Kujirai, T, Takizawa, Y, Kurumizaka, H. 登録日 2023-08-03 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.26133 Å) 主引用文献 Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8. J.Biochem., 174, 2023
6XTX	CryoEM structure of human CMG bound to ATPgammaS and DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45 homolog, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... 著者 Rzechorzek, N.J, Pellegrini, L. 登録日 2020-01-16 公開日 2020-05-27 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.29 Å) 主引用文献 CryoEM structures of human CMG-ATP gamma S-DNA and CMG-AND-1 complexes. Nucleic Acids Res., 48, 2020
5L9T	Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density 分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ... 著者 Brown, N.G, VanderLinden, R, Dube, P, Haselbach, D, Peters, J.M, Stark, H, Schulman, B.A. 登録日 2016-06-11 公開日 2016-10-26 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C. Cell, 165, 2016
5LCW	Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Mitotic checkpoint complex (APC/C-MCC) at 4.2 angstrom resolution 分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ... 著者 Alfieri, C, Chang, L, Zhang, Z, Yang, J, Maslen, S, Skehel, M, Barford, D. 登録日 2016-06-22 公開日 2016-08-10 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Molecular basis of APC/C regulation by the spindle assembly checkpoint. Nature, 536, 2016
5ED2	Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene 分子名称: Double-stranded RNA-specific editase 1, INOSITOL HEXAKISPHOSPHATE, RNA (5'-R(P*CP*AP*GP*AP*GP*CP*CP*CP*CP*CP*CP*AP*GP*CP*AP*UP*CP*GP*CP*GP*AP*GP*C)-3'), ... 著者 Matthews, M.M, Fisher, A.J. 登録日 2015-10-20 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity. Nat.Struct.Mol.Biol., 23, 2016
8HTZ	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-12-22 公開日 2024-04-03 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
8HSP	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-12-20 公開日 2024-04-03 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.32 Å) 主引用文献 Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 31, 2024
6XJ5	Carboxypeptidase G2 modified with a versatile bioconjugate for metalloprotein design 分子名称: Carboxypeptidase G2, SULFATE ION, ZINC ION 著者 Yachnin, B.J, Hansen, W.A, Khare, S.D. 登録日 2020-06-22 公開日 2021-06-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 A Bis(imidazole)-based cysteine labeling tool for metalloprotein assembly. J.Inorg.Biochem., 244, 2023
5LZU	Structure of the mammalian ribosomal termination complex with accommodated eRF1 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
8HCM	zebrafish IRF-11 DBD complex with DNA 分子名称: DNA (5'-D(P*GP*CP*TP*TP*TP*CP*AP*CP*TP*TP*TP*CP*TP*A)-3'), DNA (5'-D(P*TP*AP*GP*AP*AP*AP*GP*TP*GP*AP*AP*AP*GP*C)-3'), Interferon regulatory factor 著者 Wang, Z.X, Zhang, Y.A, Ouyang, S.Y. 登録日 2022-11-02 公開日 2024-05-15 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Crystal Structures of DNA-bound Fish IRF10 and IRF11 Reveal the Determinants of IFN Regulation. J Immunol., 2024
6XNK	Crystal structure of dimeric K72A human cytochrome c alkaline conformer 分子名称: Cytochrome c, HEME C 著者 Lei, H, Bowler, B.E. 登録日 2020-07-03 公開日 2021-07-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Alkaline State of the Domain-Swapped Dimer of Human Cytochrome c : A Conformational Switch for Apoptotic Peroxidase Activity. J.Am.Chem.Soc., 2022
6WDK	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-08 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
6WDH	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
6WOO	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal rRNA, ... 著者 Wang, J, Wang, J, Puglisi, J, Fernandez, I.S. 登録日 2020-04-25 公開日 2020-09-23 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 An active role of the eukaryotic large ribosomal subunit in translation initiation fidelity. To Be Published
5J4D	E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon 分子名称: 16S ribosomal RNA, 25S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Korostelev, A.A. 登録日 2016-03-31 公開日 2016-05-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural Basis for Translation Termination on a Pseudouridylated Stop Codon. J.Mol.Biol., 428, 2016
5DFE	70S termination complex containing E. coli RF2 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hoffer, E.D, Dunham, C.M. 登録日 2015-08-26 公開日 2016-10-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.09997559 Å) 主引用文献 Uniformity of Peptide Release Is Maintained by Methylation of Release Factors. Cell Rep, 17, 2016
8JSG	Structure of the 30S-IF3 complex from Escherichia coli 分子名称: 16S ribosomal RNA, 30S ribosomal protein S16, Small ribosomal subunit protein bS18, ... 著者 Uday, A.B, Mishra, R.K, Hussain, T. 登録日 2023-06-20 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation. Proteins, 2023

<475476477478479480481482483484485486487488489490>