5DM7

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A

Summary for 5DM7

Descriptor50S ribosomal protein L1, 50S ribosomal protein L2, 50S ribosomal protein L3, ... (32 entities in total)
Functional Keywordsprotein synthesis, peptidyltransferase, antibiotic, aminocyclitol, ribosome
Biological sourceDeinococcus radiodurans
Total number of polymer chains30
Total molecular weight1360557.41
Authors
Kaminishi, T.,Schedlbauer, A.,Ochoa-Lizarralde, B.,Connell, S.R.,Fucini, P. (deposition date: 2015-09-08, release date: 2015-11-11, Last modification date: 2015-11-25)
Primary citation
Kaminishi, T.,Schedlbauer, A.,Fabbretti, A.,Brandi, L.,Ochoa-Lizarralde, B.,He, C.G.,Milon, P.,Connell, S.R.,Gualerzi, C.O.,Fucini, P.
Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.
Nucleic Acids Res., 43:10015-10025, 2015
PubMed: 26464437 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkv975
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone0.317239.8%21.3%10.7%0.38MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5dm7
no rotation
Molmil generated image of 5dm7
rotated about x axis by 90°
Molmil generated image of 5dm7
rotated about y axis by 90°