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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5DM7

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L1polymer22423514.91UniProt (Q9RSS8)
Pfam (PF00687)
In PDB		Deinococcus radiodurans
2A50S ribosomal protein L2polymer27429918.51UniProt (Q9RXJ9)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Deinococcus radiodurans
3B50S ribosomal protein L3polymer20521962.51UniProt (Q9RXK2)
Pfam (PF00297)
In PDB		Deinococcus radiodurans
4C50S ribosomal protein L4polymer19721405.21UniProt (Q9RXK1)
Pfam (PF00573)
In PDB		Deinococcus radiodurans
5D50S ribosomal protein L5polymer17719992.51UniProt (Q9RXJ0)
Pfam (PF00673)
Pfam (PF00281)
In PDB		Deinococcus radiodurans
6E50S ribosomal protein L6polymer17118266.01UniProt (Q9RSL3)
Pfam (PF00347)
In PDB		Deinococcus radiodurans
7F50S ribosomal protein L11polymer14414945.21UniProt (Q9RSS7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Deinococcus radiodurans
8G50S ribosomal protein L13polymer14215837.31UniProt (Q9RXY1)
Pfam (PF00572)
In PDB		Deinococcus radiodurans
9H50S ribosomal protein L14polymer13414256.51UniProt (Q9RXJ2)
Pfam (PF00238)
In PDB		Deinococcus radiodurans
10I50S ribosomal protein L15polymer14115177.31UniProt (Q9RSK9)
Pfam (PF00828)
In PDB		Deinococcus radiodurans
11J50S ribosomal protein L16polymer13615543.21UniProt (Q9RXJ5)
Pfam (PF00252)
In PDB		Deinococcus radiodurans
12K50S ribosomal protein L17polymer11312538.51UniProt (Q9RSJ5)
Pfam (PF01196)
In PDB		Deinococcus radiodurans
13L50S ribosomal protein L18polymer10411070.71UniProt (Q9RSL2)
Pfam (PF00861)
In PDB		Deinococcus radiodurans
14M50S ribosomal protein L19polymer10912290.01UniProt (Q9RWB4)
Pfam (PF01245)
In PDB		Deinococcus radiodurans
15N50S ribosomal protein L20polymer11713860.11UniProt (Q9RSW7)
Pfam (PF00453)
In PDB		Deinococcus radiodurans
16O50S ribosomal protein L21polymer9410518.01UniProt (Q9RY64)
Pfam (PF00829)
In PDB		Deinococcus radiodurans
17P50S ribosomal protein L22polymer12714432.01UniProt (Q9RXJ7)
Pfam (PF00237)
In PDB		Deinococcus radiodurans
18Q50S ribosomal protein L23polymer9310336.91UniProt (Q9RXK0)
Pfam (PF00276)
In PDB		Deinococcus radiodurans
19R50S ribosomal protein L24polymer11011770.71UniProt (Q9RXJ1)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Deinococcus radiodurans
20S50S ribosomal protein L25polymer17519184.01UniProt (Q9RX88)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Deinococcus radioduransGeneral stress protein CTC
21T50S ribosomal protein L27polymer848891.31UniProt (Q9RY65)
Pfam (PF01016)
In PDB		Deinococcus radiodurans
22U50S ribosomal protein L28polymer727872.21UniProt (Q9RRG8)
Pfam (PF00830)
In PDB		Deinococcus radiodurans
23V50S ribosomal protein L29polymer667646.91UniProt (Q9RXJ4)
Pfam (PF00831)
In PDB		Deinococcus radiodurans
24W50S ribosomal protein L30polymer556079.21UniProt (Q9RSL0)
Pfam (PF00327)
In PDB		Deinococcus radiodurans
25Z50S ribosomal protein L32polymer576508.61UniProt (P49228)
Pfam (PF01783)
In PDB		Deinococcus radiodurans
26150S ribosomal protein L33polymer545736.61UniProt (Q9RSS4)
Pfam (PF00471)
In PDB		Deinococcus radiodurans
27250S ribosomal protein L34polymer475626.61UniProt (Q9RSH2)
Pfam (PF00468)
In PDB		Deinococcus radiodurans
28350S ribosomal protein L35polymer657316.91UniProt (Q9RSW6)
Pfam (PF01632)
In PDB		Deinococcus radiodurans
29X23S ribosomal RNApolymer2881933750.31GenBank (11612676)Deinococcus radiodurans
30Y5S ribosomal RNApolymer12239276.51GenBank (11612676)Deinococcus radiodurans
31X, A, Y, H, M...MAGNESIUM IONnon-polymer24.3186Chemie (MG)
32XHygromycin Anon-polymer511.51Chemie (HGR)
Sequence modifications
A: 2 - 275 (UniProt: Q9RXJ9)
PDBExternal DatabaseDetails
Lys 7Arg 7conflict
Ala 25Thr 25conflict
Leu 270Ile 270conflict
F: 1 - 144 (UniProt: Q9RSS7)
PDBExternal DatabaseDetails
Arg 2Lys 2conflict
Arg 3Lys 3conflict
L: 8 - 111 (UniProt: Q9RSL2)
PDBExternal DatabaseDetails
Lys 26Arg 26conflict
M: 2 - 110 (UniProt: Q9RWB4)
PDBExternal DatabaseDetails
-Leu 107deletion
-Arg 108deletion
-Glu 109deletion
-Leu 110deletion
U: 8 - 79 (UniProt: Q9RRG8)
PDBExternal DatabaseDetails
Ile 67Leu 67conflict
1: 2 - 50 (UniProt: Q9RSS4)
PDBExternal DatabaseDetails
Ala 0-insertion
Ala 1-insertion
Gly 3Lys 3conflict
Ala 4Asp 4conflict
Ala 5Gly 5conflict
Ala 45Lys 45conflict
His 46Lys 46conflict
Val 47His 47conflict
Phe 49Val 49conflict
Ala 50Phe 50conflict
Ala 51-insertion
Ala 52-insertion
Ala 53-insertion
X: 0 - 2880 (GenBank: 11612676)
PDBExternal DatabaseDetails
U 1526Unk 2586412conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains30
Total formula weight1355525.2
Non-Polymers*Number of molecules187
Total formula weight5032.2
All*Total formula weight1360557.4
*Water molecules are not included.

223790

PDB entries from 2024-08-14

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