PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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3ZNH	Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl. 分子名称: POLYUBIQUITIN-B, UBIQUITIN THIOESTERASE 著者 Ekkebus, R, vanKasteren, S.I, Kulathu, Y, Scholten, A, Berlin, I, deJong, A, Goerdayal, G, Neefjes, J, Heck, A.J.R, Komander, D, Ovaa, H. 登録日 2013-02-14 公開日 2013-02-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 On Terminal Alkynes that Can React with Active-Site Cysteine Nucleophiles in Proteases. J.Am.Chem.Soc., 135, 2013
3ZNG	Ankyrin repeat and SOCS-box protein 9 (ASB9) in complex with ElonginB and ElonginC 分子名称: 1,2-ETHANEDIOL, ANKYRIN REPEAT AND SOCS BOX PROTEIN 9, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ... 著者 Thomas, J, Van Molle, I, Ciulli, A. 登録日 2013-02-14 公開日 2013-12-04 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Multimeric Complexes Among Ankyrin-Repeat and Socs-Box Protein 9 (Asb9), Elonginbc, and Cullin 5: Insights Into the Structure and Assembly of Ecs-Type Cullin-Ring E3 Ubiquitin Ligases. Biochemistry, 52, 2013
3ZLZ	Lys6-linked tri-ubiquitin 分子名称: UBIQUITIN, ZINC ION 著者 Hospenthal, M.K, Freund, S.M.V, Komander, D. 登録日 2013-02-04 公開日 2013-04-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Assembly, Analysis and Architecture of Atypical Ubiquitin Chains Nat.Struct.Mol.Biol., 20, 2013
3ZKJ	Crystal Structure of Ankyrin Repeat and Socs Box-Containing Protein 9 (Asb9) in Complex with Elonginb and Elonginc 分子名称: 1,2-ETHANEDIOL, ANKYRIN REPEAT AND SOCS BOX PROTEIN 9, CHLORIDE ION, ... 著者 Muniz, J.R.C, Guo, K, Zhang, Y, Ayinampudi, V, Savitsky, P, Keates, T, Filippakopoulos, P, Vollmar, M, Yue, W.W, Krojer, T, Ugochukwu, E, von Delft, F, Knapp, S, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N. 登録日 2013-01-23 公開日 2013-01-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Molecular Architecture of the Ankyrin Socs Box Family of Cul5-Dependent E3 Ubiquitin Ligases J.Mol.Biol., 425, 2013
4IUM	Equine arteritis virus papain-like protease 2 (PLP2) covalently bound to ubiquitin 分子名称: GLYCEROL, Ubiquitin, ZINC ION, ... 著者 Bailey-Elkin, B.A, James, T.W, Mark, B.L. 登録日 2013-01-21 公開日 2013-02-13 最終更新日 2013-03-20 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Deubiquitinase function of arterivirus papain-like protease 2 suppresses the innate immune response in infected host cells. Proc.Natl.Acad.Sci.USA, 110, 2013
4II3	Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... 著者 Olsen, S.K, Lima, C.D. 登録日 2012-12-19 公開日 2013-02-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
4II2	Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg 分子名称: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Olsen, S.K, Lima, C.D. 登録日 2012-12-19 公開日 2013-02-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
4IG7	Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester 分子名称: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37 著者 Das, C, Kim, M.I, Morrow, M.E. 登録日 2012-12-16 公開日 2013-05-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.996 Å) 主引用文献 Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4V8M	High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome 分子名称: 18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT, 40S RIBOSOMAL PROTEIN S10, PUTATIVE, ... 著者 Hashem, Y, des Georges, A, Fu, J, Buss, S.N, Jossinet, F, Jobe, A, Zhang, Q, Liao, H.Y, Grassucci, R.A, Bajaj, C, Westhof, E, Madison-Antenucci, S, Frank, J. 登録日 2012-12-09 公開日 2014-07-09 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (5.57 Å) 主引用文献 High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome. Nature, 494, 2013
4I6N	Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ... 著者 Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C. 登録日 2012-11-29 公開日 2013-05-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.701 Å) 主引用文献 Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4I6L	Crystal structure of OTUB1 in complex with ubiquitin variant 分子名称: Ubiquitin, Ubiquitin thioesterase OTUB1 著者 Juang, Y.C, Sicheri, F. 登録日 2012-11-29 公開日 2013-01-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.488 Å) 主引用文献 A strategy for modulation of enzymes in the ubiquitin system. Science, 339, 2013
3ZDM	Crystal structure of the Sgt2 N domain and the Get5 UBL domain complex 分子名称: SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT- CONTAINING PROTEIN 2, UBIQUITIN-LIKE PROTEIN MDY2 著者 Tung, J.-Y, Li, Y.-C, Hsiao, C.-D. 登録日 2012-11-29 公開日 2013-10-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.803 Å) 主引用文献 Structure of the Sgt2 Dimerization Domain Complexed with the Get5 Ubl Domain Involved in the Targeting of Tail-Anchored Membrane Proteins to the Endoplasmic Reticulum. Acta Crystallogr.,Sect.D, 69, 2013
2M17	ubiquitin-like domain-containing C-terminal domain phosphatase (UBLCP1) 分子名称: Ubiquitin-like domain-containing CTD phosphatase 1 著者 Lee, W, Yun, J. 登録日 2012-11-19 公開日 2013-06-05 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution Structure and Rpn1 Interaction of the UBL Domain of Human RNA Polymerase II C-Terminal Domain Phosphatase. Plos One, 8, 2013
4HXD	Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases 分子名称: 1.7.6 3-bromanylpropan-1-amine, Polyubiquitin-C, RNA-directed RNA polymerase L, ... 著者 Capodagli, G.C, Pegan, S.D. 登録日 2012-11-09 公開日 2013-02-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases. J.Virol., 87, 2013
4HK2	U7Ub25.2540 分子名称: SULFATE ION, Ubiquitin 著者 Murray, J.M, Rouge, L. 登録日 2012-10-14 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4HJK	U7Ub7 Disulfide variant 分子名称: PHOSPHATE ION, Ubiquitin 著者 Murray, J.M, Rouge, L. 登録日 2012-10-12 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.784 Å) 主引用文献 Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4HCP	crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 分子名称: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ... 著者 Yao, Q, Shao, F. 登録日 2012-10-01 公開日 2012-11-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4HCN	Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ... 著者 Yao, Q, Cui, J, Zhu, Y, Shao, F. 登録日 2012-09-30 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4BBN	NEDD4 HECT-Ub:Ub complex 分子名称: E3 UBIQUITIN-PROTEIN LIGASE NEDD4, POLYUBIQUITIN-B 著者 Maspero, E, Valentini, E, Mari, S, Cecatiello, V, Polo, S, Pasqualato, S. 登録日 2012-09-27 公開日 2013-05-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Structure of a Ubiquitin-Loaded Hect Ligase Reveals the Molecular Basis for Catalytic Priming Nat.Struct.Mol.Biol., 20, 2013
2LZ6	Distinct ubiquitin binding modes exhibited by sh3 domains: molecular determinants and functional implications 分子名称: CD2-associated protein, Ubiquitin 著者 Ortega-Roldan, J, Azuaga, A, Blackledge, M, Van Nuland, N. 登録日 2012-09-24 公開日 2013-10-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Distinct Ubiquitin Binding Modes Exhibited by SH3 Domains: Molecular Determinants and Functional Implications. Plos One, 8, 2013
4B9K	pVHL-ELOB-ELOC complex_(2S,4R)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide bound 分子名称: (2S,4R)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide, ACETATE ION, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ... 著者 Buckley, D.L, Gustafson, J.L, VanMolle, I, Roth, A.G, SeopTae, H, Gareiss, P.C, Jorgensen, W.L, Ciulli, A, Crews, C.M. 登録日 2012-09-05 公開日 2012-10-24 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1 Alpha Angew.Chem.Int.Ed.Engl., 51, 2012
4B95	pVHL-EloB-EloB-EloC complex_(2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide bound 分子名称: (2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, ACETATE ION, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ... 著者 Buckley, D.L, Gustafson, J.L, VanMolle, I, Roth, A.G, SeopTae, H, Gareiss, P.C, Jorgensen, W.L, Ciulli, A, Crews, C.M. 登録日 2012-08-31 公開日 2012-10-24 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1Alpha Angew.Chem.Int.Ed.Engl., 51, 2012
4GU2	Crystal structure of ubiquitin from Entamoeba histolytica to 1.35 Angstrom 分子名称: Ubiquitin 著者 Bosch, D.E, Siderovski, D.P. 登録日 2012-08-29 公開日 2012-12-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013
4GSW	Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom 分子名称: SULFATE ION, Ubiquitin 著者 Bosch, D.E, Siderovski, D.P. 登録日 2012-08-28 公開日 2012-12-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013
2LXA	Solution structure of the Get5 ubiquitin-like domain 分子名称: Ubiquitin-like protein MDY2 著者 Chartron, J.W, Vandervelde, D.G, Clemons Jr, W.M. 登録日 2012-08-19 公開日 2012-11-21 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface. Cell Rep, 2, 2012

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