PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4E03	Structure of ParF-ADP form 2 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid partitioning protein ParF 著者 Schumacher, M.A, Ye, Q, Barge, M.R, Barilla, D, Hayes, F. 登録日 2012-03-02 公開日 2012-06-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem., 287, 2012
6K4U	Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM) 分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-27 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
5B2Q	Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM) 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Hirano, H, Nishimasu, H, Nakane, T, Ishitani, R, Nureki, O. 登録日 2016-02-01 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure and Engineering of Francisella novicida Cas9 Cell, 164, 2016
4DDV	Thermotoga maritima reverse gyrase, triclinic form 分子名称: Reverse gyrase, ZINC ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
4DZZ	Structure of ParF-ADP, crystal form 1 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid partitioning protein ParF 著者 Schumacher, M.A, Ye, Q, Barge, M.R, Barilla, D, Hayes, F. 登録日 2012-03-01 公開日 2012-06-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem., 287, 2012
4E09	Structure of ParF-AMPPCP, I422 form 分子名称: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Plasmid partitioning protein ParF, SULFATE ION 著者 Schumacher, M.A, Ye, Q, Barge, M.R, Barilla, D, Hayes, F. 登録日 2012-03-02 公開日 2012-06-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem., 287, 2012
4E07	ParF-AMPPCP-C2221 form 分子名称: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Plasmid partitioning protein ParF 著者 Schumacher, M.A, Ye, Q, Barge, M.R, Barilla, D, Hayes, F. 登録日 2012-03-02 公開日 2012-06-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem., 287, 2012
5B2O	Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM) 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Hirano, H, Nishimasu, H, Nakane, T, Ishitani, R, Nureki, O. 登録日 2016-02-01 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure and Engineering of Francisella novicida Cas9 Cell, 164, 2016
6K4S	Crystal structure of xCas9 in complex with sgRNA and DNA (TGC PAM) 分子名称: CRISPR-associated endonuclease Cas9/Csn1, non-targeted DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-26 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
3GYP	Rtt106p 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, Histone chaperone RTT106 著者 Liu, Y, Huang, H, Shi, Y, Teng, M. 登録日 2009-04-04 公開日 2009-12-08 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.406 Å) 主引用文献 Structural analysis of Rtt106p reveals a DNA-binding role required for heterochromatin silencing J.Biol.Chem., 285, 2010
6KBD	fused To-MtbCsm1 with 2dATP 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A),CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), MAGNESIUM ION 著者 Li, T, Huo, Y, Jiang, T. 登録日 2019-06-24 公開日 2020-06-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Mycobacterium tuberculosis CRISPR/Cas system Csm1 holds clues to the evolutionary relationship between DNA polymerase and cyclase activity. Int.J.Biol.Macromol., 170, 2020
6FN0	The animal-like Cryptochrome from Chlamydomonas reinhardtii in complex with 6-4 DNA 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Cryptochrome photoreceptor, ... 著者 Franz, S, Ignatz, E, Wenzel, S, Zielosko, H, Yamamoto, J, Mittag, M, Essen, L.-O. 登録日 2018-02-02 公開日 2018-08-01 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii. Nucleic Acids Res., 46, 2018
6K57	Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM) 分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-28 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
5B2P	Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM) 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Hirano, H, Nishimasu, H, Nakane, T, Ishitani, R, Nureki, O. 登録日 2016-02-01 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure and Engineering of Francisella novicida Cas9 Cell, 164, 2016
1CI4	THE CRYSTAL STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR (BAF) 分子名称: PROTEIN (BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)) 著者 Umland, T.C, Wei, S.-Q, Craigie, R, Davies, D.R. 登録日 1999-04-07 公開日 2000-08-16 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis of DNA bridging by barrier-to-autointegration factor. Biochemistry, 39, 2000
6K4Q	Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM) 分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*CP*GP*GP*TP*AP*TP*TP*G)-3'), ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-26 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
5CYN	JC Virus large T-antigen origin binding domain F258L mutant 分子名称: 1,2-ETHANEDIOL, Large T antigen 著者 Meinke, G, Bohm, A, Bullock, P.A. 登録日 2015-07-30 公開日 2015-12-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural Based Analyses of the JC Virus T-Antigen F258L Mutant Provides Evidence for DNA Dependent Conformational Changes in the C-Termini of Polyomavirus Origin Binding Domains. Plos Pathog., 12, 2016
4DDX	Thermotoga maritima reverse gyrase, primitive monoclinic form 分子名称: Reverse gyrase, ZINC ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (4.17 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
4DDU	Thermotoga maritima reverse gyrase, C2 FORM 1 分子名称: Reverse gyrase, ZINC ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2012-01-19 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling. Nucleic Acids Res., 41, 2013
6KC0	fused To-MtbCsm1 with 2ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A),CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), MAGNESIUM ION 著者 Li, T, Huo, Y, Jiang, T. 登録日 2019-06-26 公開日 2020-07-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.295 Å) 主引用文献 Mycobacterium tuberculosis CRISPR/Cas system Csm1 holds clues to the evolutionary relationship between DNA polymerase and cyclase activity. Int.J.Biol.Macromol., 170, 2020
4EKF	Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution 分子名称: Adenain, SODIUM ION 著者 Baniecki, M.L, McGrath, W.J, Mangel, W.F. 登録日 2012-04-09 公開日 2012-10-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (0.98 Å) 主引用文献 Regulation of a Viral Proteinase by a Peptide and DNA in One-dimensional Space: III. ATOMIC RESOLUTION STRUCTURE OF THE NASCENT FORM OF THE ADENOVIRUS PROTEINASE. J.Biol.Chem., 288, 2013
3U0U	Crystal structure of the DB1883-D(CGCGAATTCGCG)2 complex at 1.24 A resolution 分子名称: 2-(4'-carbamimidoylbiphenyl-4-yl)-1H-indole-6-carboximidamide, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wei, D.G, Neidle, S. 登録日 2011-09-29 公開日 2012-09-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.24 Å) 主引用文献 Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster. J.Am.Chem.Soc., 135, 2013
3U08	Crystal structure of DB1963-D(CGCGAATTCGCG)2 complex at 1.25 A resolution 分子名称: 4'-(5-carbamimidoyl-1H-benzimidazol-2-yl)biphenyl-4-carboxamide, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wei, D.G, Neidle, S. 登録日 2011-09-28 公開日 2012-09-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster. J.Am.Chem.Soc., 135, 2013
3UWX	Crystal structure of UvrA-UvrB complex 分子名称: Excinuclease ABC, A subunit, UvrABC system protein B, ... 著者 Pakotiprapha, D, Jeruzalmi, D. 登録日 2011-12-03 公開日 2012-02-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (4.398 Å) 主引用文献 Structure and mechanism of the UvrA-UvrB DNA damage sensor. Nat.Struct.Mol.Biol., 19, 2012
2R6F	Crystal Structure of Bacillus stearothermophilus UvrA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Excinuclease ABC subunit A, ZINC ION 著者 Inuzuka, Y, Pakotiprapha, D, Bowman, B.R, Jeruzalmi, D, Verdine, G.L. 登録日 2007-09-05 公開日 2008-01-08 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding. Mol.Cell, 29, 2008

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