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9H1P
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Mature HIV-1 matrix from MA-SP1 cleavage mutant
分子名称: Gag polyprotein
著者Stacey, J.C.V, Hrebik, D, Briggs, J.A.G.
登録日2024-10-10
公開日2024-12-04
最終更新日2025-04-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The conserved HIV-1 spacer peptide 2 triggers matrix lattice maturation.
Nature, 640, 2025
3HBO
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BU of 3hbo by Molmil
Crystal structure of chemically synthesized [D-Ala51/51']HIV-1 protease
分子名称: N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide, [D-Ala51/51']HIV-1 protease
著者Torbeev, V.Y, Kent, S.B.H.
登録日2009-05-04
公開日2010-05-26
最終更新日2025-03-26
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Protein conformational dynamics in the mechanism of HIV-1 protease catalysis.
Proc.Natl.Acad.Sci.USA, 108, 2011
6TF6
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Human galectin-3c in complex with a galactose derivative
分子名称: CHLORIDE ION, Galectin-3, ~{N}-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-4-[[5,6-bis(fluoranyl)-2-oxidanylidene-chromen-3-yl]methoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]methyl]-4-fluoranyl-naphthalene-1-carboxamide
著者Nilsson, U.J, Zetterberg, F, Hakansson, M, Logan, D.T.
登録日2019-11-13
公開日2020-11-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献3-Substituted 1-Naphthamidomethyl-C-galactosyls Interact with Two Unique Sub-sites for High-Affinity and High-Selectivity Inhibition of Galectin-3.
Molecules, 24, 2019
7SPD
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BU of 7spd by Molmil
Crystal Structure of The Tetramerization Domain (29-147) From Human Voltage-gated Potassium Channel Kv2.1 in C 2 2 21 Space Group
分子名称: DI(HYDROXYETHYL)ETHER, Potassium voltage-gated channel subfamily B member 1, ZINC ION
著者Xu, Z, Schnicker, N, Baker, S.
登録日2021-11-02
公開日2022-06-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Pentameric assembly of the Kv2.1 tetramerization domain.
Acta Crystallogr D Struct Biol, 78, 2022
6C2H
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Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: the Structure of the Catalytic Core
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
著者Kreinbring, C.A, Tu, Y, Liu, D, Petsko, G.A, Ringe, D.
登録日2018-01-08
公開日2018-04-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: One Enzymatic Step at a Time.
Biochemistry, 57, 2018
6C4P
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Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: the Structure of the PMP Complex
分子名称: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, CALCIUM ION, ...
著者Kreinbring, C.A, Tu, Y, Liu, D, Berkowitz, D.B, Petsko, G.A, Ringe, D.
登録日2018-01-12
公開日2018-04-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: One Enzymatic Step at a Time.
Biochemistry, 57, 2018
4U5W
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Crystal Structure of HIV-1 Nef-SF2 Core Domain in Complex with the Src Family Kinase Hck SH3-SH2 Tandem Regulatory Domains
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, IODIDE ION, Protein Nef, ...
著者Alvarado, J.J, Yeh, J.I, Smithgall, T.E.
登録日2014-07-25
公開日2014-08-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Interaction with the Src Homology (SH3-SH2) Region of the Src-family Kinase Hck Structures the HIV-1 Nef Dimer for Kinase Activation and Effector Recruitment.
J.Biol.Chem., 289, 2014
9IL8
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Crystal Structure of SME-1 Class A Carbapenemase in complex with Durlobactam
分子名称: (2S,5R)-1-formyl-3-methyl-5-[(sulfooxy)amino]-1,2,5,6-tetrahydropyridine-2-carboxamide, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Dhankhar, K, Hazra, S.
登録日2024-06-29
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of SME-1 Class A Carbapenemase in complex with Durlobactam
To Be Published
9D4W
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Structure of PAK1 in complex with compound 12
分子名称: N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine, Serine/threonine-protein kinase PAK 1
著者Dementiev, A, Suto, R.K, Olland, A.M.
登録日2024-08-13
公開日2025-04-02
最終更新日2025-07-16
実験手法X-RAY DIFFRACTION (2.218 Å)
主引用文献Identification of a p21-activated kinase 1 (PAK1) inhibitor with 10-fold selectivity against PAK2.
Bioorg.Med.Chem.Lett., 127, 2025
9BLY
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Composite structure of full-length human dynein-1 in phi-particle conformation
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
著者Chai, P, Zhang, K.
登録日2024-05-02
公開日2025-04-23
最終更新日2025-08-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献The mechanochemical cycle of reactive full-length human dynein 1.
Nat.Struct.Mol.Biol., 32, 2025
9D4Y
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Structure of PAK1 in complex with compound 31
分子名称: N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine, Serine/threonine-protein kinase PAK 1
著者Fontano, E, Suto, R.K, Olland, A.M.
登録日2024-08-13
公開日2025-04-02
最終更新日2025-07-16
実験手法X-RAY DIFFRACTION (1.847 Å)
主引用文献Identification of a p21-activated kinase 1 (PAK1) inhibitor with 10-fold selectivity against PAK2.
Bioorg.Med.Chem.Lett., 127, 2025
5AUU
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Crystal structure of DAPK1 in complex with luteolin.
分子名称: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Death-associated protein kinase 1
著者Yokoyama, T, Mizuguchi, M.
登録日2015-06-10
公開日2015-10-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Insight into the Interactions between Death-Associated Protein Kinase 1 and Natural Flavonoids.
J.Med.Chem., 58, 2015
5AUY
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Crystal structure of DAPK1 in complex with morin.
分子名称: 2-[2,4-bis(oxidanyl)phenyl]-3,5,7-tris(oxidanyl)chromen-4-one, Death-associated protein kinase 1
著者Yokoyama, T, Mizuguchi, M.
登録日2015-06-10
公開日2015-10-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Insight into the Interactions between Death-Associated Protein Kinase 1 and Natural Flavonoids.
J.Med.Chem., 58, 2015
6FWH
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Acanthamoeba IGPD in complex with R-C348 to 1.7A resolution
分子名称: Imidazoleglycerol-phosphate dehydratase, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Roberts, C.W, Bisson, C, Baker, P.J.
登録日2018-03-06
公開日2018-07-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural and functional studies of histidine biosynthesis in Acanthamoeba spp. demonstrates a novel molecular arrangement and target for antimicrobials.
PLoS ONE, 13, 2018
8TBS
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BU of 8tbs by Molmil
Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator AG-946
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, 6-[(6-aminopyridin-2-yl)methyl]-4-methyl-2-[(1H-pyrazol-3-yl)methyl]-4,6-dihydro-5H-[1,3]thiazolo[5',4':4,5]pyrrolo[2,3-d]pyridazin-5-one, MANGANESE (II) ION, ...
著者Jin, L, Padyana, A.
登録日2023-06-29
公開日2023-12-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure-Based Design of AG-946, a Pyruvate Kinase Activator.
Chemmedchem, 19, 2024
6FXA
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Dimerization domain of TP901-1 CI repressor
分子名称: CI, SULFATE ION
著者Varming, A.K, Rasmussen, K.K, Lo Leggio, L.
登録日2018-03-08
公開日2018-05-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis of the bacteriophage TP901-1 CI repressor dimerization and interaction with DNA.
FEBS Lett., 592, 2018
9IO6
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Crystal Structure of SME-1 Carbapenemase in complex with Nacubactam.
分子名称: (2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Dhankhar, K, Hazra, S.
登録日2024-07-08
公開日2025-07-16
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal Structure of SME-1 Carbapenemase in complex with Nacubactam.
To Be Published
6GCQ
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Trypanosoma brucei PTR1 in complex with inhibitor 2b (F192)
分子名称: 6-(trifluoromethylsulfanyl)-1,3-benzothiazol-2-amine, ACETATE ION, DIMETHYL SULFOXIDE, ...
著者Pozzi, C, Landi, G, Mangani, S.
登録日2018-04-18
公開日2019-04-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Enhancement of Benzothiazoles as Pteridine Reductase-1 Inhibitors for the Treatment of Trypanosomatidic Infections.
J.Med.Chem., 62, 2019
7SVM
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BU of 7svm by Molmil
DPP8 IN COMPLEX WITH LIGAND ICeD-2
分子名称: (2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one, Dipeptidyl peptidase 8, trimethylamine oxide
著者Lammens, A, Hollenstein, K, Klein, D.J.
登録日2021-11-19
公開日2022-10-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献A Phenotypic Screen Identifies Potent DPP9 Inhibitors Capable of Killing HIV-1 Infected Cells.
Acs Chem.Biol., 17, 2022
8CCW
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Crystal structure of human Sirt3 in complex with an acetylated HIV1 Tat-46-54 substrate peptide
分子名称: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, Protein Tat, ...
著者Adolph, R.S, Steegborn, C.
登録日2023-01-27
公開日2023-05-10
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Molecular Mechanism of Sirtuin 1 Inhibition by Human Immunodeficiency Virus 1 Tat Protein.
Life, 13, 2023
6FY2
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Crystal structure of a V2p-reactive RV144 vaccine-like antibody, CAP228-16H, in complex with a heterologous CAP225 V1V2
分子名称: CAP225 Scaffolded V1V2, CAP228-16H Heavy Chain, CAP228-16H Light Chain, ...
著者Wibmer, C.K, Moore, P.L, Morris, L.
登録日2018-03-10
公開日2018-09-05
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Common helical V1V2 conformations of HIV-1 Envelope expose the alpha 4 beta 7 binding site on intact virions.
Nat Commun, 9, 2018
6G40
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BU of 6g40 by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH9525
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, N-glycosylase/DNA lyase, ...
著者Masuyer, G, Helleday, T, Stenmark, P.
登録日2018-03-26
公開日2019-04-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Optimization of N-Piperidinyl-Benzimidazolone Derivatives as Potent and Selective Inhibitors of 8-Oxo-Guanine DNA Glycosylase 1.
Chemmedchem, 18, 2023
8CR0
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Crystal structure of human carbonic anhydrase II in complex with a triazolyl benzoxaborole inhibitor
分子名称: 1-[1,1-bis(oxidanyl)-3~{H}-2,1$l^{4}-benzoxaborol-6-yl]-4-[(4-fluoranylphenoxy)methyl]-1,2,3-triazole, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Alterio, V, De Simone, G, Esposito, D.
登録日2023-03-07
公開日2023-06-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献6-Substituted Triazolyl Benzoxaboroles as Selective Carbonic Anhydrase Inhibitors: In Silico Design, Synthesis, and X-ray Crystallography.
J.Med.Chem., 66, 2023
7SVL
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DPP9 IN COMPLEX WITH LIGAND ICeD-2
分子名称: (2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one, Dipeptidyl peptidase 9
著者Lammens, A, Hollenstein, K, Klein, D.J.
登録日2021-11-19
公開日2022-10-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献A Phenotypic Screen Identifies Potent DPP9 Inhibitors Capable of Killing HIV-1 Infected Cells.
Acs Chem.Biol., 17, 2022
3HG0
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Crystal structure of a DARPin in complex with ORF49 from Lactococcal phage TP901-1
分子名称: Baseplate protein, Designed Ankyrin Repeat Protein (DARPin) 20
著者Veesler, D, Dreier, B, Blangy, S, Lichiere, J, Tremblay, D, Moineau, S, Spinelli, S, Tegoni, M, Pluckthun, A, Campanacci, V, Cambillau, C.
登録日2009-05-13
公開日2009-09-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure and function of a DARPin neutralizing inhibitor of lactococcal phage TP901-1: comparison of DARPin and camelid VHH binding mode.
J.Biol.Chem., 284, 2009

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