PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5C2F	K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese and beta-thujaplicinol 分子名称: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one, Gene 2 protein, MANGANESE (II) ION 著者 Zhao, H, Tang, L. 登録日 2015-06-15 公開日 2015-10-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
2J85	B116 of Sulfolobus turreted icosahedral virus (STIV) 分子名称: STIV B116 著者 Larson, E.T, Reiter, D, Young, M.J, Lawrence, C.M. 登録日 2006-10-19 公開日 2006-11-02 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 A New DNA Binding Protein Highly Conserved in Diverse Crenarchaeal Viruses Virology, 363, 2007
2IG0	Structure of 53BP1/methylated histone peptide complex 分子名称: Dimethylated Histone H4-K20 peptide, SULFATE ION, Tumor suppressor p53-binding protein 1 著者 Mer, G. 登録日 2006-09-22 公開日 2007-01-02 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair. Cell(Cambridge,Mass.), 127, 2006
7NYY	Cryo-EM structure of the MukBEF monomer 分子名称: 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, Chromosome partition protein MukB, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
7NZ4	Cryo-EM structure of the MukBEF dimer 分子名称: 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, Chromosome partition protein MukB, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
2JPB	Solution Structure of OMPR-C DNA Binding Protein 分子名称: Transcriptional regulatory protein ompR 著者 Liao, X, Kenney, L, Liao, W, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2007-05-03 公開日 2007-06-12 最終更新日 2023-12-20 実験手法 SOLUTION NMR 主引用文献 Solution Structure of OMPR-C DNA Binding Protein To be Published
7TUJ	NMR solution structure of the phosphorylated MUS81-binding region from human SLX4 分子名称: Structure-specific endonuclease subunit SLX4 著者 Payliss, B.J, Reichheld, S.E, Lemak, A, Arrowsmith, C.H, Sharpe, S, Wyatt, H.D.M. 登録日 2022-02-02 公開日 2022-10-19 最終更新日 2022-11-09 実験手法 SOLUTION NMR 主引用文献 Phosphorylation of the DNA repair scaffold SLX4 drives folding of the SAP domain and activation of the MUS81-EME1 endonuclease. Cell Rep, 41, 2022
5CR5	X-RAY CRYSTAL STRUCTURE AT 1.61A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A BIPHENYL PYRROLIDINE ETHER COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR. 分子名称: 1,2-ETHANEDIOL, 3-({(3R)-1-[(5-bromothiophen-2-yl)carbonyl]pyrrolidin-3-yl}oxy)-N-methyl-2'-[(methylsulfonyl)amino]biphenyl-4-carboxamide, Branched-chain-amino-acid aminotransferase, ... 著者 Somers, D.O. 登録日 2015-07-22 公開日 2015-08-12 最終更新日 2015-09-02 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Discovery, SAR, and X-ray Binding Mode Study of BCATm Inhibitors from a Novel DNA-Encoded Library. Acs Med.Chem.Lett., 6, 2015
6FXA	Dimerization domain of TP901-1 CI repressor 分子名称: CI, SULFATE ION 著者 Varming, A.K, Rasmussen, K.K, Lo Leggio, L. 登録日 2018-03-08 公開日 2018-05-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural basis of the bacteriophage TP901-1 CI repressor dimerization and interaction with DNA. FEBS Lett., 592, 2018
6KDN	HIV-1 reverse transcriptase with Q151M/Y115F/F116Y:DNA:dGTP ternary complex 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (38-MER), GLYCEROL, ... 著者 Yasutake, Y, Hattori, S.I, Tamura, N, Maeda, K. 登録日 2019-07-02 公開日 2020-03-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.303 Å) 主引用文献 Structural features in common of HBV and HIV-1 resistance against chirally-distinct nucleoside analogues entecavir and lamivudine. Sci Rep, 10, 2020
5C10	Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 分子名称: Gene 2 protein 著者 Zhao, H, Tang, L. 登録日 2015-06-12 公開日 2015-10-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
5C2D	K428A mutant gp2c of large terminase subunit from bacteriophage sf6 with calcium 分子名称: CALCIUM ION, Gene 2 protein 著者 Zhao, H, Tang, L. 登録日 2015-06-15 公開日 2015-10-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
453D	5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEX 分子名称: 4-{[4-HYDROXY-PHENYL]-1H-BENZIMIDAZOLE-5-YL}-BENZIMIDAZOLE-2-YL-[4-HYDROXY-BENZENE], DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Neidle, S. 登録日 1999-02-18 公開日 2000-05-15 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Symmetric bis-benzimidazoles, a new class of sequence-selective DNA-binding molecules J.Chem.Soc.,Chem.Commun., 1999
6IFO	Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex 分子名称: AcrIIA2, CRISPR-associated endonuclease Cas9/Csn1, RNA (99-MER) 著者 Liu, L, Wang, Y. 登録日 2018-09-20 公開日 2019-01-23 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.313 Å) 主引用文献 Phage AcrIIA2 DNA Mimicry: Structural Basis of the CRISPR and Anti-CRISPR Arms Race. Mol. Cell, 73, 2019
2KUO	Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response 分子名称: Aprataxin and PNK-like factor, ZINC ION 著者 Li, G.Y, McCulloch, R.D, Fenton, A, Cheung, M, Meng, L, Ikura, M, Koch, C.A. 登録日 2010-02-23 公開日 2010-05-05 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure and identification of ADP-ribose recognition motifs of aprataxin PNK-like factor (APLF) required for the interaction with sites of DNA damage response To be Published
5C15	K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese 分子名称: Gene 2 protein, MANGANESE (II) ION 著者 Zhao, H, Tang, L. 登録日 2015-06-12 公開日 2015-10-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
6KDK	HIV-1 reverse transcriptase with Q151M/Y115F/F116Y:DNA:dCTP ternary complex 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA/RNA (38-MER), GLYCEROL, ... 著者 Yasutake, Y, Hattori, S.I, Tamura, N, Maeda, K. 登録日 2019-07-02 公開日 2020-03-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Structural features in common of HBV and HIV-1 resistance against chirally-distinct nucleoside analogues entecavir and lamivudine. Sci Rep, 10, 2020
7NPD	Vibiro cholerae ParA2 分子名称: Walker A-type ATPase 著者 Parker, A.V, Bergeron, J.R.C. 登録日 2021-02-26 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The structure of the bacterial DNA segregation ATPase filament reveals the conformational plasticity of ParA upon DNA binding. Nat Commun, 12, 2021
7Z4J	SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state 分子名称: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, Non-target strand of 18-nucleotide complementary DNA substrate, ... 著者 Pacesa, M, Jinek, M. 登録日 2022-03-03 公開日 2022-08-31 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
7YMO	Crystal structure of the recombination mediator protein RecO from Campylobacter jejuni 分子名称: Recombination protein RecO, ZINC ION 著者 Lee, S, Oh, H.B, Yoon, S.I. 登録日 2022-07-29 公開日 2022-08-31 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal Structure of the Recombination Mediator Protein RecO from Campylobacter jejuni and Its Interaction with DNA and a Zinc Ion. Int J Mol Sci, 23, 2022
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) 分子名称: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.714 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6IK9	HIV-1 reverse transcriptase with Q151M/G112S/D113A/Y115F/F116Y/F160L/I159L:DNA:dGTP ternary complex 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (38-MER), GLYCEROL, ... 著者 Yasutake, Y, Hattori, S.I, Tamura, N, Maeda, K. 登録日 2018-10-15 公開日 2019-01-30 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.435 Å) 主引用文献 Active-site deformation in the structure of HIV-1 RT with HBV-associated septuple amino acid substitutions rationalizes the differential susceptibility of HIV-1 and HBV against 4'-modified nucleoside RT inhibitors. Biochem. Biophys. Res. Commun., 509, 2019
3HG8	Crystal Structure of 5-SMe Derivatized DNA 分子名称: 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3' 著者 Sheng, J, Hassan, A.E.A, Zhang, W, Huang, Z. 登録日 2009-05-13 公開日 2009-07-21 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate Chemistryselect, 8, 2023
8CIL	Crystal structure of Coxiella burnetii Fic protein 2 分子名称: Fic family protein 著者 Hoepfner, D, Itzen, A, Pogenberg, V. 登録日 2023-02-10 公開日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3. Commun Biol, 6, 2023
1WTU	TRANSCRIPTION FACTOR 1, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: TRANSCRIPTION FACTOR 1 著者 Jia, X, Grove, A, Ivancic, M, Hsu, V.L, Geiduschek, E.P, Kearns, D.R. 登録日 1996-07-29 公開日 1997-02-12 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the Bacillus subtilis phage SPO1-encoded type II DNA-binding protein TF1 in solution. J.Mol.Biol., 263, 1996

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