PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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2YPF	Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism 分子名称: 5'-D(*TP*AP*GP*AP*GP*GP*GP*TP*TP*AP*GP*GP*TP*TP *TP*AP*TP*AP*TP*AP*AP)-3', 5'-D(*TP*TP*TP*AP*TP*AP*TP*AP*AP*AP*CP*CP*TP*AP *AP*CP*CP*CP*TP*CP*TP*AP)-3', AVRBS3 著者 Stella, S, Molina, R, Yefimenko, I, Prieto, J, Silva, G.H, Bertonati, C, Juillerat, A, Duchateau, P, Montoya, G. 登録日 2012-10-30 公開日 2013-08-28 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure of the Avrbs3-DNA Complex Provides New Insights Into the Initial Thymine-Recognition Mechanism Acta Crystallogr.,Sect.D, 69, 2013
6TPQ	RNase M5 bound to 50S ribosome with precursor 5S rRNA 分子名称: 50S ribosomal protein L10, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Oerum, S, Dendooven, T, Gilet, L, Catala, M, Degut, C, Trinquier, A, Barraud, P, Luisi, B, Condon, C, Tisne, C. 登録日 2019-12-13 公開日 2020-09-30 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs. Mol.Cell, 80, 2020
6GSN	Structure of a partial yeast 48S preinitiation complex in closed conformation 分子名称: 18S rRNA (1798-MER), 40S ribosomal protein S0, 40S ribosomal protein S1, ... 著者 Llacer, J.L, Hussain, T, Ramakrishnan, V. 登録日 2018-06-14 公開日 2019-06-26 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (5.75 Å) 主引用文献 Large-scale movement of eIF3 domains during translation initiation modulate start codon selection. Nucleic Acids Res., 2021
6GOV	Structure of THE RNA POLYMERASE LAMBDA-BASED ANTITERMINATION COMPLEX 分子名称: 30S ribosomal protein S10, Antitermination protein N, DNA (I), ... 著者 Loll, B, Krupp, F, Said, N, Huang, Y, Buerger, J, Mielke, T, Spahn, C.M.T, Wahl, M.C. 登録日 2018-06-04 公開日 2019-02-13 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural Basis for the Action of an All-Purpose Transcription Anti-termination Factor. Mol.Cell, 74, 2019
6GH6	Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme intermediate partially loaded complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Glyde, R, Ye, F.Z, Zhang, X.D. 登録日 2018-05-04 公開日 2018-07-04 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structures of Bacterial RNA Polymerase Complexes Reveal the Mechanism of DNA Loading and Transcription Initiation. Mol. Cell, 70, 2018
5O9G	Structure of nucleosome-Chd1 complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ... 著者 Farnung, L, Vos, S.M, Wigge, C, Cramer, P. 登録日 2017-06-19 公開日 2017-10-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Nucleosome-Chd1 structure and implications for chromatin remodelling. Nature, 550, 2017
6GTG	Transition state structure of Cpf1(Cas12a) I4 conformation 分子名称: CRISPR-associated endonuclease Cas12a, DNA (32-MER), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ... 著者 Mesa, P, Montoya, G, Stella, S. 登録日 2018-06-18 公開日 2018-12-19 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity. Cell, 175, 2018
4RU4	Crystal structure of the tailspike protein gp49 from Pseudomonas phage LKA1 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, SODIUM ION, ... 著者 Browning, C, Shneider, M.M, Leiman, P.G. 登録日 2014-11-18 公開日 2015-11-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.903 Å) 主引用文献 The O-specific polysaccharide lyase from the phage LKA1 tailspike reduces Pseudomonas virulence. Sci Rep, 7, 2017
3QDD	HSP90A N-terminal domain in complex with BIIB021 分子名称: 6-chloro-9-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-9H-purin-2-amine, Heat shock protein HSP 90-alpha 著者 Arndt, J.W, Biamonte, M.A. 登録日 2011-01-18 公開日 2012-07-18 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 EC144 Is a Potent Inhibitor of the Heat Shock Protein 90. J.Med.Chem., 55, 2012
5NDV	Crystal structure of Paromomycin bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-09 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6HL1	Crystal Structure of Farnesoid X receptor (FXR) with bound NCoA-2 peptide and CDCA 分子名称: Bile acid receptor, CHENODEOXYCHOLIC ACID, NCoA-2 peptide (Nuclear receptor coactivator 2), ... 著者 Kudlinzki, D, Merk, D, Linhard, V.L, Saxena, K, Schubert-Zsilavecz, M, Schwalbe, H. 登録日 2018-09-10 公開日 2019-05-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.599 Å) 主引用文献 Molecular tuning of farnesoid X receptor partial agonism. Nat Commun, 10, 2019
6U2X	Structure of ALDH7A1 mutant E399G complexed with NAD 分子名称: Alpha-aminoadipic semialdehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Tanner, J.J, Korasick, D.A, Laciak, A.R. 登録日 2019-08-20 公開日 2019-11-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural analysis of pathogenic mutations targeting Glu427 of ALDH7A1, the hot spot residue of pyridoxine-dependent epilepsy. J. Inherit. Metab. Dis., 43, 2020
4TUA	Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
1ML5	Structure of the E. coli ribosomal termination complex with release factor 2 分子名称: 30S 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Klaholz, B.P, Pape, T, Zavialov, A.V, Myasnikov, A.G, Orlova, E.V, Vestergaard, B, Ehrenberg, M, van Heel, M. 登録日 2002-08-30 公開日 2003-01-14 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (14 Å) 主引用文献 Structure of the Escherichia coli ribosomal termination complex with release factor 2 Nature, 421, 2003
3LZ1	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2) 分子名称: CHLORIDE ION, DNA (145-MER), Histone H2A, ... 著者 Vasudevan, D, Chua, E.Y.D, Davey, C.A. 登録日 2010-03-01 公開日 2010-09-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of nucleosome core particles containing the '601' strong positioning sequence J.Mol.Biol., 403, 2010
4NXM	Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8) 分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2013-12-09 公開日 2014-05-21 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (3.65 Å) 主引用文献 A structural basis for streptomycin resistance To be Published
3LZ0	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1) 分子名称: CHLORIDE ION, DNA (145-MER), Histone H2A, ... 著者 Vasudevan, D, Chua, E.Y.D, Davey, C.A. 登録日 2010-03-01 公開日 2010-09-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of nucleosome core particles containing the '601' strong positioning sequence J.Mol.Biol., 403, 2010
6GSM	Structure of a partial yeast 48S preinitiation complex in open conformation. 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0, 40S ribosomal protein S1, ... 著者 Llacer, J.L, Hussain, T, Gordiyenko, Y, Ramakrishnan, V. 登録日 2018-06-14 公開日 2019-07-31 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (5.15 Å) 主引用文献 Large-scale movement of eIF3 domains during translation initiation modulate start codon selection. Nucleic Acids Res., 2021
4TUC	Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
6I0Y	TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Su, T, Kudva, R, von Heijne, G, Beckmann, R. 登録日 2018-10-26 公開日 2018-12-05 最終更新日 2019-01-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Folding pathway of an Ig domain is conserved on and off the ribosome. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3PO3	Arrested RNA Polymerase II reactivation intermediate 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, DNA non-template strand, ... 著者 Cheung, A.C.M, Cramer, P. 登録日 2010-11-21 公開日 2011-03-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature, 471, 2011
6GXO	Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N. 登録日 2018-06-27 公開日 2018-08-15 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nat Commun, 9, 2018
6ULV	BRD4-BD1 in complex with the cyclic peptide 4.2_1 分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bromodomain-containing protein 4, Cyclic peptide 4.2_3, ... 著者 Patel, K, Walshe, J.L, Walport, L.J, Mackay, J.P. 登録日 2019-10-08 公開日 2020-12-02 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Cyclic peptides can engage a single binding pocket through highly divergent modes. Proc.Natl.Acad.Sci.USA, 117, 2020
6GWT	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N. 登録日 2018-06-25 公開日 2018-08-15 最終更新日 2019-02-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nat Commun, 9, 2018
4TUD	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014

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