PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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4R62	Structure of Rad6~Ub 分子名称: ACETATE ION, Ubiquitin-40S ribosomal protein S27a, Ubiquitin-conjugating enzyme E2 2 著者 Kumar, P, Wolberger, C. 登録日 2014-08-22 公開日 2015-09-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Role of a non-canonical surface of Rad6 in ubiquitin conjugating activity. Nucleic Acids Res., 43, 2015
2MSG	Solid-state NMR structure of ubiquitin 分子名称: Ubiquitin 著者 Lakomek, N, Habenstein, B, Loquet, A, Shi, C, Giller, K, Wolff, S, Becker, S, Fasshuber, H, Lange, A. 登録日 2014-08-04 公開日 2015-02-18 最終更新日 2024-05-15 実験手法 SOLID-STATE NMR 主引用文献 Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR. Protein Sci., 24, 2015
3J7P	Structure of the 80S mammalian ribosome bound to eEF2 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7R	Structure of the translating mammalian ribosome-Sec61 complex 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7O	Structure of the mammalian 60S ribosomal subunit 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7Q	Structure of the idle mammalian ribosome-Sec61 complex 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3WXG	Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin 分子名称: Ubiquitin, Uncharacterized protein 著者 Sato, Y, Fukai, S. 登録日 2014-07-30 公開日 2015-02-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity. Nat.Struct.Mol.Biol., 22, 2015
3WXE	Crystal structure of CYLD USP domain (C596S) in complex with Met1-linked diubiquitin 分子名称: Ubiquitin, Uncharacterized protein 著者 Sato, Y, Fukai, S. 登録日 2014-07-30 公開日 2015-02-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity. Nat.Struct.Mol.Biol., 22, 2015
3WXF	Crystal structure of CYLD USP domain (C596S E674Q) in complex with Met1-linked diubiquitin 分子名称: SULFATE ION, Ubiquitin, Uncharacterized protein 著者 Sato, Y, Fukai, S. 登録日 2014-07-30 公開日 2015-02-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity. Nat.Struct.Mol.Biol., 22, 2015
2MRO	Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1) 分子名称: DNA damage-inducible protein 1, Polyubiquitin-B 著者 Zhang, D, Fushman, D. 登録日 2014-07-14 公開日 2015-02-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
2MRE	NMR structure of the Rad18-UBZ/ubiquitin complex 分子名称: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-C, ZINC ION 著者 Rizzo, A.A, Salerno, P.E, Bezsonova, I, Korzhnev, D.M. 登録日 2014-07-03 公開日 2014-10-22 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR Structure of the Human Rad18 Zinc Finger in Complex with Ubiquitin Defines a Class of UBZ Domains in Proteins Linked to the DNA Damage Response. Biochemistry, 53, 2014
3WWQ	Crystal structure of FAAP20 UBZ domain in complex with Lys63-linked diubiquitin 分子名称: Fanconi anemia-associated protein of 20 kDa, Ubiquitin, ZINC ION 著者 Sato, Y, Fukai, S. 登録日 2014-06-23 公開日 2015-05-13 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for Ubiquitin Recognition by Ubiquitin-Binding Zinc Finger of FAAP20 Plos One, 10, 2015
2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum 分子名称: Ubiquitin-like protein 著者 Ye, K. 登録日 2014-06-22 公開日 2015-06-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
3J79	Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Wong, W, Bai, X.C, Brown, A, Fernandez, I.S, Hanssen, E, Condron, M, Tan, Y.H, Baum, J, Scheres, S.H.W. 登録日 2014-06-02 公開日 2014-07-16 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife, 3, 2014
3J77	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Svidritskiy, E, Brilot, A.F, Koh, C.S, Grigorieff, N, Korostelev, A.A. 登録日 2014-05-29 公開日 2014-08-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.2 Å) 主引用文献 Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Structure, 22, 2014
3J78	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Svidritskiy, E, Brilot, A.F, Koh, C.S, Grigorieff, N, Korostelev, A.A. 登録日 2014-05-29 公開日 2014-08-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Structure, 22, 2014
4UN2	Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin 分子名称: UBIQUITIN, UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2 著者 Michielssens, S, Peters, J.H, Ban, D, Pratihar, S, Seeliger, D, Sharma, M, Giller, K, Sabo, T.M, Becker, S, Lee, D, Griesinger, C, de Groot, B.L. 登録日 2014-05-23 公開日 2014-08-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 A Designed Conformational Shift to Control Protein Binding Specificity. Angew.Chem.Int.Ed.Engl., 53, 2014
4PIJ	X-ray crystal structure of the K11S/K63S double mutant of ubiquitin 分子名称: GLYCEROL, SULFATE ION, Ubiquitin 著者 Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. 登録日 2014-05-08 公開日 2014-10-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Enhancing ubiquitin crystallization through surface-entropy reduction. Acta Crystallogr.,Sect.F, 70, 2014
4PIH	X-ray crystal structure of the K33S mutant of ubiquitin 分子名称: CALCIUM ION, CHLORIDE ION, Ubiquitin 著者 Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. 登録日 2014-05-08 公開日 2014-10-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Enhancing ubiquitin crystallization through surface-entropy reduction. Acta Crystallogr.,Sect.F, 70, 2014
4PIG	Crystal structure of the ubiquitin K11S mutant 分子名称: CALCIUM ION, CHLORIDE ION, SODIUM ION, ... 著者 Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. 登録日 2014-05-08 公開日 2014-10-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Enhancing ubiquitin crystallization through surface-entropy reduction. Acta Crystallogr.,Sect.F, 70, 2014
2MOR	A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings 分子名称: Ubiquitin 著者 Camilloni, C, Vendruscolo, M. 登録日 2014-04-29 公開日 2014-06-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings. J.Phys.Chem.B, 119, 2015
4Q5H	Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Polyubiquitin, ... 著者 Cygler, M, Grishin, A.M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) 登録日 2014-04-16 公開日 2014-07-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 Structural Basis for the Inhibition of Host Protein Ubiquitination by Shigella Effector Kinase OspG. Structure, 22, 2014
4Q5E	Shigella Effector Kinase OspG bound to E2-Ub UbcH7-Ub Conjugate 分子名称: Polyubiquitin, Protein kinase OspG, Ubiquitin-conjugating enzyme E2 L3 著者 Cygler, M, Grishin, A.M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) 登録日 2014-04-16 公開日 2014-07-02 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (1.869 Å) 主引用文献 Structural Basis for the Inhibition of Host Protein Ubiquitination by Shigella Effector Kinase OspG. Structure, 22, 2014
3J6Y	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014
3J6X	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014

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