PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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1D89	A DNA DODECAMER CONTAINING AN ADENINE TRACT CRYSTALLIZES IN A UNIQUE LATTICE AND EXHIBITS A NEW BEND 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*AP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*TP*TP*TP*TP*TP*CP*GP*CP*G)-3') 著者 DiGabriele, A.D, Steitz, T.A. 登録日 1992-07-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend. J.Mol.Biol., 231, 1993
1UDV	Crystal structure of the hyperthermophilic archaeal dna-binding protein Sso10b2 at 1.85 A 分子名称: DNA binding protein SSO10b, ZINC ION 著者 Chou, C.-C, Lin, T.-W, Chen, C.-Y, Wang, A.H.J. 登録日 2003-05-07 公開日 2003-08-05 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of the hyperthermophilic archaeal DNA-binding protein Sso10b2 at a resolution of 1.85 Angstroms J.BACTERIOL., 185, 2003
5FZ5	Transcription initiation complex structures elucidate DNA opening (CC) 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. 登録日 2016-03-10 公開日 2016-05-18 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.8 Å) 主引用文献 Transcription Initiation Complex Structures Elucidate DNA Opening Nature, 533, 2016
307D	Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis 分子名称: DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') 著者 Han, G.W, Kopka, M.L, Cascio, D, Grzeskowiak, K, Dickerson, R.E. 登録日 1997-01-07 公開日 1997-01-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis. J.Mol.Biol., 269, 1997
8C7U	Transcriptional pleiotropic repressor CodY from Enterococcus faecalis in complex with Leu and a 30-bp DNA fragment encompassing two overlapping binding sites 分子名称: DNA (29-MER), DNA (30-MER), GTP-sensing transcriptional pleiotropic repressor CodY, ... 著者 Hainzl, T, Sauer-Eriksson, A.E. 登録日 2023-01-17 公開日 2023-06-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structural insights into CodY activation and DNA recognition. Nucleic Acids Res., 51, 2023
4WX9	Crystal structure of Mycobacterium tuberculosis OGT in complex with DNA 分子名称: DNA (5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'), GLYCEROL, ... 著者 Miggiano, R, Rossi, F, Garavaglia, S, Rizzi, M. 登録日 2014-11-13 公開日 2015-11-04 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of Mycobacterium tuberculosis O6-methylguanine-DNA methyltransferase protein clusters assembled on to damaged DNA. Biochem.J., 473, 2016
8QLP	CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex 分子名称: DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3'), MAGNESIUM ION, RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ... 著者 Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D. 登録日 2023-09-20 公開日 2024-01-31 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Res., 52, 2024
5FYW	Transcription initiation complex structures elucidate DNA opening (OC) 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. 登録日 2016-03-10 公開日 2016-05-18 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.35 Å) 主引用文献 Transcription Initiation Complex Structures Elucidate DNA Opening Nature, 533, 2016
6KBX	Crystal structure of yedK in complex with ssDNA containing abasic site 分子名称: DNA 5'-D (*CP*GP*GP*TP* (PED)P*GP*AP*TP*TP*C)-3', SOS response-associated protein 著者 Wang, N, Bao, H, Huang, H. 登録日 2019-06-26 公開日 2019-07-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.221 Å) 主引用文献 Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Nucleic Acids Res., 47, 2019
2DCG	MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE 著者 Wang, A.H.-J, Quigley, G.J, Kolpak, F.J, Crawford, J.L, Van Boom, J.H, Van Der Marel, G.A, Rich, A. 登録日 1988-08-29 公開日 1989-01-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (0.9 Å) 主引用文献 Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature, 282, 1979
6ERG	Complex of XLF and heterodimer Ku bound to DNA 分子名称: DNA (21-MER), DNA (34-MER), Non-homologous end-joining factor 1, ... 著者 Nemoz, C, Legrand, P, Ropars, V, Charbonnier, J.B. 登録日 2017-10-18 公開日 2018-10-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining. Nat. Struct. Mol. Biol., 25, 2018
6K3K	Solution structure of APOBEC3G-CD2 with ssDNA, Product B 分子名称: DNA dC->dU-editing enzyme APOBEC-3G, DNA/RNA (5'-D(*AP*TP*TP*CP*UP*(ICY)P*AP*AP*TP*T)-3'), ZINC ION 著者 Cao, C, Yan, X, Lan, W, Wang, C. 登録日 2019-05-19 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA. Chem Asian J, 14, 2019
6K3J	Solution structure of APOBEC3G-CD2 with ssDNA, Product A 分子名称: DNA (5'-D(*AP*TP*TP*CP*UP*(IUR)P*AP*AP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION 著者 Cao, C, Yan, X, Lan, W, Wang, C. 登録日 2019-05-19 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA. Chem Asian J, 14, 2019
4E10	Protelomerase tela Y201A covalently complexed with substrate DNA 分子名称: DNA (5'-D(*CP*AP*TP*AP*AP*(BRU)P*AP*AP*CP*AP*AP*(BRU)P*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*(BRU)P*(BRU)P*GP*(BRU)P*(BRU)P*AP*(BRU)P*(BRU)P*AP*(BRU)P*G)-3'), Protelomerase, ... 著者 Shi, K, Aihara, H. 登録日 2012-03-05 公開日 2013-02-13 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.506 Å) 主引用文献 An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
5XK0	Structure of 8-mer DNA2 分子名称: DNA (5'-D(*GP*CP*CP*CP*GP*AP*GP*C)-3') 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-04 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.451 Å) 主引用文献 A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs Angew. Chem. Int. Ed. Engl., 56, 2017
6KCQ	Crystal structure of yedK with ssDNA containing an abasic site 分子名称: DNA (5'-D(P*AP*AP*AP*(PED)P*AP*A)-3'), SOS response-associated protein 著者 Wang, N, Bao, H, Huang, H. 登録日 2019-06-28 公開日 2019-07-10 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.701 Å) 主引用文献 Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Nucleic Acids Res., 47, 2019
5XK1	Structure of 8-mer DNA3 分子名称: DNA (5'-D(*GP*GP*AP*GP*CP*CP*CP*C)-3') 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-04 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.501 Å) 主引用文献 A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs. Angew. Chem. Int. Ed. Engl., 56, 2017
6FB6	Crystal Structure of a Tailored I-CreI Homing Endonuclease Protein (3115 variant) in complex with an altered version of its target DNA (Haemoglobin beta subunit gene) at 5NNN region in the presence of Manganese 分子名称: DNA (5'-D(*TP*CP*AP*GP*AP*CP*TP*TP*GP*TP*CP*CP*AP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*CP*TP*CP*CP*TP*GP*TP*GP*G)-3'), DNA (5'-D(P*AP*CP*AP*AP*GP*TP*CP*TP*GP*A)-3'), ... 著者 Molina, R, Prieto, J. 登録日 2017-12-18 公開日 2018-07-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. Sci Rep, 8, 2018
1KHC	Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b 分子名称: DNA cytosine-5 methyltransferase 3B2, UNKNOWN ATOM OR ION 著者 Qiu, C, Sawada, K, Zhang, X, Cheng, X. 登録日 2001-11-29 公開日 2002-02-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds. Nat.Struct.Biol., 9, 2002
6LAE	Crystal structure of the DNA-binding domain of human XPA in complex with DNA 分子名称: DNA (5'-D(P*GP*CP*AP*TP*CP*TP*CP*GP*CP*CP*T)-3'), DNA (5'-D(P*TP*GP*GP*CP*GP*AP*GP*AP*TP*GP*C)-3'), DNA repair protein complementing XP-A cells, ... 著者 Lian, F.M, Yang, X, Jiang, Y.L, Yang, F, Li, C, Yang, W, Qian, C. 登録日 2019-11-12 公開日 2020-02-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 New structural insights into the recognition of undamaged splayed-arm DNA with a single pair of non-complementary nucleotides by human nucleotide excision repair protein XPA. Int.J.Biol.Macromol., 148, 2020
6LFF	transcription factor SATB1 CUTr1 domain in complex with a phosphorothioate DNA 分子名称: DNA (5'-D(*GP*(C7R)P*(PST)P*AP*AP*TP*AP*TP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*(AS)P*(PST)P*(AS)P*(PST)P*TP*AP*GP*C)-3'), DNA-binding protein SATB1 著者 Akutsu, Y, Kubota, T, Yamasaki, T, Yamasaki, K. 登録日 2019-12-02 公開日 2020-04-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Enhanced affinity of racemic phosphorothioate DNA with transcription factor SATB1 arising from diastereomer-specific hydrogen bonds and hydrophobic contacts. Nucleic Acids Res., 48, 2020
1D80	CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3') 著者 Skelly, J.V, Edwards, K.J, Jenkins, T.C, Neidle, S. 登録日 1992-06-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation. Proc.Natl.Acad.Sci.USA, 90, 1993
6KCS	Crystal structure of HIRAN domain of HLTF in complex with duplex DNA 分子名称: DNA (5'-D(*AP*CP*TP*GP*TP*AP*CP*GP*TP*AP*CP*AP*GP*T)-3'), Helicase-like transcription factor 著者 Hishiki, A, Hashimoto, A. 登録日 2019-06-28 公開日 2020-06-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression. J.Biochem., 167, 2020
6L75	Crystal structure of d(GTGGGCCGAC)2 DNA duplex 分子名称: DNA (5'-D(P*GP*TP*GP*GP*GP*CP*CP*GP*AP*C)-3') 著者 Hou, M.H, Satange, R.B, Zeng, J.Y. 登録日 2019-10-31 公開日 2021-01-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.578 Å) 主引用文献 Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction. Nucleic Acids Res., 49, 2021
5NSS	Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta', ... 著者 Glyde, R, Ye, F.Z, Darbari, V.C, Zhang, N, Buck, M, Zhang, X.D. 登録日 2017-04-26 公開日 2017-06-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation. Mol. Cell, 67, 2017

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