Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3QJQ
DownloadVisualize
BU of 3qjq by Molmil
The structure of and photolytic induced changes of carbon monoxide binding to the cytochrome ba3-oxidase from Thermus thermophilus
分子名称: CARBON MONOXIDE, COPPER (I) ION, Cytochrome c oxidase polypeptide 2A, ...
著者Liu, B, Zhang, Y, Sage, J.T, Doukov, T, Chen, Y, Stout, C.D, Fee, J.A.
登録日2011-01-30
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural changes that occur upon photolysis of the Fe(II)(a3)-CO complex in the cytochrome ba(3)-oxidase of Thermus thermophilus: A combined X-ray crystallographic and infrared spectral study demonstrates CO binding to Cu(B).
Biochim.Biophys.Acta, 1817, 2012
4J6L
DownloadVisualize
BU of 4j6l by Molmil
Crystal structure of calcium2+-free wild-type CD23 lectin domain (crystal form C)
分子名称: Low affinity immunoglobulin epsilon Fc receptor
著者Dhaliwal, B, Yuan, D, Sutton, B.J.
登録日2013-02-11
公開日2013-08-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Conformational plasticity at the IgE-binding site of the B-cell receptor CD23.
Mol.Immunol., 56, 2013
2G97
DownloadVisualize
BU of 2g97 by Molmil
Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase In Complex with the Specific Inhibitor FK-866
分子名称: (2E)-N-{4-[1-(benzenecarbonyl)piperidin-4-yl]butyl}-3-(pyridin-3-yl)prop-2-enamide, Nicotinamide phosphoribosyltransferase
著者Kim, M.-K, Eom, S.H.
登録日2006-03-05
公開日2006-08-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor 1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866
J.Mol.Biol., 362, 2006
2L4C
DownloadVisualize
BU of 2l4c by Molmil
Solution Structure of the b domain of Human ERp27
分子名称: Endoplasmic reticulum resident protein 27
著者Amin, N.T, Wallis, K, Rowe, M.L, Kelly, G, Frenkiel, T.A, Williamson, R.A, Howard, M.J, Freedman, R.B.
登録日2010-10-03
公開日2010-11-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure and dynamics of the b domain of human ERp27
To be Published
4GEE
DownloadVisualize
BU of 4gee by Molmil
Pyrrolopyrimidine inhibitors of DNA gyrase B and topoisomerase IV, part I: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
分子名称: (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-yloxy)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine, DNA gyrase subunit B, GLYCEROL
著者Bensen, D.C, Chen, Z, Tari, L.W.
登録日2012-08-01
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
Bioorg.Med.Chem.Lett., 23, 2013
4GFN
DownloadVisualize
BU of 4gfn by Molmil
Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic
分子名称: (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine, DNA gyrase subunit B, GLYCEROL
著者Bensen, D.C, Trzoss, M, Tari, L.W.
登録日2012-08-03
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
Bioorg.Med.Chem.Lett., 23, 2013
2I7B
DownloadVisualize
BU of 2i7b by Molmil
Structure of the naturally occuring mutant of human ABO(H) Blood group B glycosyltransferase: GTB/A268T
分子名称: MERCURY (II) ION, alpha 1-3-galactosyltransferase
著者Letts, J.A, Evans, S.V.
登録日2006-08-30
公開日2007-05-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis for red cell phenotypic changes in newly identified, naturally occurring subgroup mutants of the human blood group B glycosyltransferase.
Transfusion, 47, 2007
2N96
DownloadVisualize
BU of 2n96 by Molmil
An unexpected mode of small molecule DNA binding provides the structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A
分子名称: (1R,1'R,2S,2'S,3R,3'R,5aR,10aR,11a'S)-2'-[(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)oxy]-2,2'-diethyl-11,11 '-dihydrazinyl-6,6',9,9'-tetrahydroxy-4,4',5,5',10,10'-hexaoxo-1,1'-bis{[2,4,6-trideoxy-4-(dimethylamino)-beta-L-arabino -hexopyranosyl]oxy}[2,2',3,3',4,4',5,5',5a,8,10,10',10a,11a'-tetradecahydro-1H,1'H-[3,3'-bibenzo[b]fluorene]]-2-yl 2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranoside, DNA (5'-D(*GP*CP*TP*AP*TP*AP*GP*C)-3')
著者Woo, C.M, Li, Z, Paulson, E, Herzon, S.B.
登録日2015-11-07
公開日2016-06-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A.
Proc.Natl.Acad.Sci.USA, 113, 2016
4I5I
DownloadVisualize
BU of 4i5i by Molmil
Crystal structure of the SIRT1 catalytic domain bound to NAD and an EX527 analog
分子名称: (6S)-2-chloro-5,6,7,8,9,10-hexahydrocyclohepta[b]indole-6-carboxamide, NAD-dependent protein deacetylase sirtuin-1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Zhao, X, Allison, D, Condon, B, Zhang, F, Gheyi, T, Zhang, A, Ashok, S, Russell, M, Macewan, I, Qian, Y, Jamison, J.A, Luz, J.G.
登録日2012-11-28
公開日2013-01-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The 2.5 angstrom crystal structure of the SIRT1 catalytic domain bound to nicotinamide adenine dinucleotide (NAD+) and an indole (EX527 analogue) reveals a novel mechanism of histone deacetylase inhibition.
J.Med.Chem., 56, 2013
4HZ5
DownloadVisualize
BU of 4hz5 by Molmil
Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity
分子名称: 6-ethyl-4-methoxy-2-(pyridin-3-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbaldehyde, DNA topoisomerase IV, B subunit
著者Bensen, D.C, Creighton, C.J, Tari, L.W.
登録日2012-11-14
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
Bioorg.Med.Chem.Lett., 23, 2013
1VCR
DownloadVisualize
BU of 1vcr by Molmil
An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
分子名称: CHLOROPHYLL A, CHLOROPHYLL B, Chlorophyll a-b binding protein AB80
著者Hino, T, Kanamori, E, Shen, J.-R, Kouyama, T.
登録日2004-03-10
公開日2004-03-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (9.5 Å)
主引用文献An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes.
Acta Crystallogr.,Sect.D, 60, 2004
4FQL
DownloadVisualize
BU of 4fql by Molmil
Influenza B HA Antibody (Fab) CR8033
分子名称: monoclonal antibody CR8033 heavy chain, monoclonal antibody CR8033 light chain
著者Dreyfus, C, Laursen, N.S, Wilson, I.A.
登録日2012-06-25
公開日2012-08-22
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献Highly conserved protective epitopes on influenza B viruses.
Science, 337, 2012
2E3J
DownloadVisualize
BU of 2e3j by Molmil
The crystal structure of epoxide hydrolase B (Rv1938) from mycobacterium tuberculosis at 2.1 angstrom
分子名称: ACETATE ION, EPOXIDE HYDROLASE EPHB
著者Biswal, B.K, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
登録日2006-11-27
公開日2007-12-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The molecular structure of epoxide hydrolase B from Mycobacterium tuberculosis and its complex with a urea-based inhibitor.
J.Mol.Biol., 381, 2008
1CV9
DownloadVisualize
BU of 1cv9 by Molmil
NMR STUDY OF ITAM PEPTIDE SUBSTRATE
分子名称: IG-ALPHA ITAM PEPTIDE
著者Gaul, B.S, Harrison, M.L, Geahlen, R.L, Post, C.B.
登録日1999-08-23
公開日1999-08-31
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Substrate recognition by the Lyn protein-tyrosine kinase. NMR structure of the immunoreceptor tyrosine-based activation motif signaling region of the B cell antigen receptor.
J.Biol.Chem., 275, 2000
2Z34
DownloadVisualize
BU of 2z34 by Molmil
Crystal structure of SpCia1/Asf1 complex with Hip1
分子名称: Histone chaperone cia1, Protein hir1
著者Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-31
公開日2008-03-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of fission yeast histone chaperone Asf1 complexed with the Hip1 B-domain or the Cac2 C terminus
J.Biol.Chem., 283, 2008
2Z3F
DownloadVisualize
BU of 2z3f by Molmil
Crystal structure of spCia1/Asf1 complexed with Cac2 peptide
分子名称: Histone chaperone cia1, SPAC26H5.03 protein
著者Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-06-04
公開日2008-03-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
1XWW
DownloadVisualize
BU of 1xww by Molmil
Crystal Structure of Human B-form Low Molecular Weight Phosphotyrosyl Phosphatase at 1.6 Angstrom Resolution
分子名称: GLYCEROL, Low molecular weight phosphotyrosine protein phosphatase, SULFATE ION
著者Stauffacher, C.V, Zabell, A.P.R.
登録日2004-11-02
公開日2005-11-01
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Crystal structure of the human B-form low molecular weight phosphotyrosyl phosphatase at 1.6-A resolution.
J.Biol.Chem., 281, 2006
4GI0
DownloadVisualize
BU of 4gi0 by Molmil
Crystal structure of CD23 lectin domain mutant E249A
分子名称: GLYCEROL, Low affinity immunoglobulin epsilon Fc receptor
著者Yuan, D, Sutton, B.J, Dhaliwal, B.
登録日2012-08-08
公開日2013-06-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E.
J.Biol.Chem., 288, 2013
3FKV
DownloadVisualize
BU of 3fkv by Molmil
AmpC K67R mutant complexed with benzo(b)thiophene-2-boronic acid (bzb)
分子名称: BENZO[B]THIOPHENE-2-BORONIC ACID, Beta-lactamase, PHOSPHATE ION, ...
著者Chen, Y, McReynolds, A, Shoichet, B.K.
登録日2008-12-17
公開日2009-03-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.847 Å)
主引用文献Re-examining the role of Lys67 in class C beta-lactamase catalysis.
Protein Sci., 18, 2009
4GJX
DownloadVisualize
BU of 4gjx by Molmil
Crystal structure of CD23 lectin domain mutant D258A
分子名称: GLYCEROL, Low affinity immunoglobulin epsilon Fc receptor
著者Yuan, D, Sutton, B.J, Dhaliwal, B.
登録日2012-08-10
公開日2013-06-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E.
J.Biol.Chem., 288, 2013
4G9C
DownloadVisualize
BU of 4g9c by Molmil
Human B-Raf Kinase Domain bound to a Type II Pyrazolopyridine Inhibitor
分子名称: 3-{[3-(2-cyanopropan-2-yl)benzoyl]amino}-2,6-difluoro-N-(3-methoxy-2H-pyrazolo[3,4-b]pyridin-5-yl)benzamide, Serine/threonine-protein kinase B-raf
著者Voegtli, W.C, Sturgis, H.L.
登録日2012-07-23
公開日2012-11-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Pyrazolopyridine inhibitors of B-Raf(V600E). Part 4: Rational design and kinase selectivity profile of cell potent type II inhibitors.
Bioorg.Med.Chem.Lett., 22, 2012
3GZX
DownloadVisualize
BU of 3gzx by Molmil
Crystal Structure of the Biphenyl Dioxygenase in complex with Biphenyl from Comamonas testosteroni Sp. Strain B-356
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BIPHENYL, Biphenyl dioxygenase subunit alpha, ...
著者Kumar, P, Colbert, C.L, Bolin, J.T.
登録日2009-04-08
公開日2010-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
Plos One, 8, 2013
1NY1
DownloadVisualize
BU of 1ny1 by Molmil
CRYSTAL STRUCTURE OF B. SUBTILIS POLYSACCHARIDE DEACETYLASE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR127.
分子名称: Probable polysaccharide deacetylase pdaA
著者Forouhar, F, Edstrom, W, Khan, J, Ma, L, Chiang, Y, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2003-02-11
公開日2003-03-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Polysaccharide Deacetylase (PDAA_BACSU) from B. Subtilis (Pdaa_Bacsu) Northeast Structural Genomics Research Consortium (Nesg) Target Sr127
To be Published
3D80
DownloadVisualize
BU of 3d80 by Molmil
Structural Analysis of a Holo Enzyme Complex of Mouse Dihydrofolate Reductase with NADPH and a Ternary Complex wtih the Potent and Selective Inhibitor 2,4-Diamino-6-(2'-hydroxydibenz[b,f]azepin-5-yl)methylpteridine
分子名称: (4aS)-5-[(2,4-diaminopteridin-6-yl)methyl]-4a,5-dihydro-2H-dibenzo[b,f]azepin-8-ol, Dihydrofolate reductase, GLYCEROL, ...
著者Cody, V.
登録日2008-05-22
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural analysis of a holoenzyme complex of mouse dihydrofolate reductase with NADPH and a ternary complex with the potent and selective inhibitor 2,4-diamino-6-(2'-hydroxydibenz[b,f]azepin-5-yl)methylpteridine.
Acta Crystallogr.,Sect.D, 64, 2008
4JXN
DownloadVisualize
BU of 4jxn by Molmil
CRYSTAL STRUCTURE OF POLYPRENYL SYNTHASE ISP_B (TARGET EFI-509198) FROM Roseobacter denitrificans
分子名称: CHLORIDE ION, Octaprenyl-diphosphate synthase, UNKNOWN LIGAND
著者Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Al Obaidi, N, Stead, M, Love, J, Poulter, C.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2013-03-28
公開日2013-05-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Isoprenoid Synthase Isp_B from Roseobacter Denitrificans
To be Published

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon