PDB: 23413 件ウェブページステータス検索Chemie searchBIRD

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8XKY	Structure of the TOM40 complex annealed 分子名称: Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, Mitochondrial import receptor subunit TOM5, ... 著者 Yang, L.Y, Shen, Q.T. 登録日 2023-12-25 公開日 2024-12-25 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 Structure of the TOM40 complex annealed To Be Published
5IEE	Murine endoplasmic reticulum alpha-glucosidase II with 1-deoxynojirimycin 分子名称: 1,2-ETHANEDIOL, 1-DEOXYNOJIRIMYCIN, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Caputo, A.T, Roversi, P, Alonzi, D.S, Kiappes, J.L, Zitzmann, N. 登録日 2016-02-25 公開日 2016-07-27 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structures of mammalian ER alpha-glucosidase II capture the binding modes of broad-spectrum iminosugar antivirals. Proc.Natl.Acad.Sci.USA, 113, 2016
5LY7	Crystal structure of NagZ H174A mutant from Pseudomonas aeruginosa in complex with the inhibitor 2-acetamido-1,2-dideoxynojirimycin 分子名称: 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN, Beta-hexosaminidase, DI(HYDROXYETHYL)ETHER 著者 Acebron, I, Artola-Recolons, C, Mahasenan, K, Mobashery, S, Hermoso, J.A. 登録日 2016-09-25 公開日 2017-05-17 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Catalytic Cycle of the N-Acetylglucosaminidase NagZ from Pseudomonas aeruginosa. J. Am. Chem. Soc., 139, 2017
5NVR	Crystal structure of the Rif1 N-terminal domain (RIF1-NTD) from Saccharomyces cerevisiae 分子名称: Telomere length regulator protein RIF1 著者 Bunker, R.D, Shi, T, Thoma, N.H. 登録日 2017-05-04 公開日 2017-06-14 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (3.95 Å) 主引用文献 Rif1 maintains telomeres and mediates DNA repair by encasing DNA ends. Nat. Struct. Mol. Biol., 24, 2017
6R9I	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module 分子名称: PAN2-PAN3 deadenylation complex catalytic subunit PAN2 著者 Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. 登録日 2019-04-03 公開日 2019-05-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
5CYZ	Structure of S. cerevisiae Hrr25:Mam1 complex, form 1 分子名称: Casein kinase I homolog HRR25, Monopolin complex subunit MAM1, ZINC ION 著者 Ye, Q, Corbett, K.D. 登録日 2015-07-31 公開日 2016-08-03 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.841 Å) 主引用文献 Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator. Embo J., 35, 2016
5EL6	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-11-04 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
8A2C	The crystal structure of the S178A mutant of PET40, a PETase enzyme from an unclassified Amycolatopsis 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ... 著者 Costanzi, E, Applegate, V, Port, A, Smits, S.H.J. 登録日 2022-06-03 公開日 2023-06-14 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The metagenome-derived esterase PET40 is highly promiscuous and hydrolyses polyethylene terephthalate (PET). Febs J., 291, 2024
5IWU	Macrolide 2'-phosphotransferase type II complexed with erythromycin 分子名称: ACETATE ION, CALCIUM ION, ERYTHROMYCIN A, ... 著者 Berghuis, A.M, Fong, D.H. 登録日 2016-03-22 公開日 2017-04-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure, 25, 2017
8ZPW	Cryo-EM structure of the yeast Htm1/Pdi1 complex at a resolution of 3.0 angstrom 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ER degradation-enhancing alpha-mannosidase-like protein 1, ... 著者 Wu, X.W, Zhao, D, Rapoport, T.A. 登録日 2024-05-31 公開日 2024-11-13 最終更新日 2024-11-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Initiation of ERAD by the bifunctional complex of Mnl1 mannosidase and protein disulfide isomerase. Biorxiv, 2024
5CZO	Structure of S. cerevisiae Hrr25:Mam1 complex, form 2 分子名称: Casein kinase I homolog HRR25, Monopolin complex subunit MAM1, ZINC ION 著者 Ye, Q, Corbett, K.D. 登録日 2015-07-31 公開日 2016-08-03 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.894 Å) 主引用文献 Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator. Embo J., 35, 2016
1DS3	CRYSTAL STRUCTURE OF OMTKY3-CH2-ASP19I 分子名称: OVOMUCOID 著者 Bateman, K.S, Huang, K, Anderson, S, Lu, W, Qasim, M.A, Laskowski Jr, M, James, M.N.G. 登録日 2000-01-06 公開日 2001-01-31 最終更新日 2021-11-03 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I J.Mol.Biol., 305, 2001
6CBO	X-ray structure of GenB1 from micromonospora echinospora in complex with neamine and PLP (as the external aldimine) 分子名称: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2-amino-2,6-dideoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-glucopyranoside, 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ... 著者 Dow, G.T, Thoden, J.B, Holden, H.M. 登録日 2018-02-03 公開日 2018-02-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin. Protein Sci., 27, 2018
4URO	Crystal Structure of Staph GyraseB 24kDa in complex with Novobiocin 分子名称: DNA GYRASE SUBUNIT B, NOVOBIOCIN 著者 Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B. 登録日 2014-07-01 公開日 2014-07-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode. Acs Chem.Biol., 9, 2014
6CFD	ADEP4 bound to E. faecium ClpP 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ATP-dependent Clp protease proteolytic subunit, N-[(6aS,12S,15aS,17R,21R,23aS)-17,21-dimethyl-6,11,15,20,23-pentaoxooctadecahydro-2H,6H,11H,15H-pyrido[2,1-i]dipyrrolo[2,1-c:2',1'-l][1,4,7,10,13]oxatetraazacyclohexadecin-12-yl]-3,5-difluoro-Nalpha-[(2E)-hept-2-enoyl]-L-phenylalaninamide 著者 Lee, R.E, Griffith, E.C. 登録日 2018-02-14 公開日 2018-05-16 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 In VivoandIn VitroEffects of a ClpP-Activating Antibiotic against Vancomycin-Resistant Enterococci. Antimicrob. Agents Chemother., 62, 2018
5H29	Crystal Structure of the NTD_N/C domain of Alkylhydroperoxide Reductase AhpF from Enterococcus Faecalis (V583) 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PROLINE, SULFATE ION, ... 著者 Balakrishna, A.M, Kwang, T.Y, Gruber, G. 登録日 2016-10-14 公開日 2017-11-22 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Novel insights into the vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F Biochim. Biophys. Acta, 1861, 2017
4WUH	Crystal structure of E. faecalis DNA binding domain LiaR wild type complexed with 22bp DNA 分子名称: DNA (5'-D(P*AP*AP*AP*TP*CP*G)-3'), DNA (5'-D(P*GP*GP*AP*CP*TP*TP*AP*AP*GP*AP*AP*CP*GP*AP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*CP*TP*TP*AP*AP*GP*TP*CP*C)-3'), ... 著者 Davlieva, M, Shamoo, Y. 登録日 2014-10-31 公開日 2015-05-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.294 Å) 主引用文献 A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. Nucleic Acids Res., 43, 2015
7AQS	Crystal structure of E. coli DPS in space group P1 分子名称: DNA protection during starvation protein, FE (III) ION 著者 Jakob, R.P, Pipercevic, J, Righetto, R, Goldie, K, Stahlberg, H, Maier, T, Hiller, S. 登録日 2020-10-22 公開日 2021-09-01 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia. Biochim Biophys Acta Biomembr, 1863, 2021
4WSZ	Crystal structure of the DNA binding domains of wild type LiaR from E. faecalis 分子名称: ACETATE ION, GLYCEROL, PRASEODYMIUM ION, ... 著者 Davlieva, M, Shamoo, Y. 登録日 2014-10-29 公開日 2015-05-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.769 Å) 主引用文献 A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. Nucleic Acids Res., 43, 2015
8QX8	Endosomal membrane tethering complex CORVET 分子名称: E3 ubiquitin-protein ligase PEP5, Vacuolar membrane protein PEP3, Vacuolar protein sorting-associated protein 16, ... 著者 Shvarev, D, Ungermann, C, Moeller, A. 登録日 2023-10-23 公開日 2024-07-03 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structure of the endosomal CORVET tethering complex. Nat Commun, 15, 2024
8QOF	Cryo-EM structure of the yeast SPT-Orm2-Dimer complex 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ORM2 isoform 1, PYRIDOXAL-5'-PHOSPHATE, ... 著者 Schaefer, J, Koerner, C, Moeller, A, Froehlich, F. 登録日 2023-09-28 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 The structure of the Orm2-containing serine palmitoyltransferase complex reveals distinct inhibitory potentials of yeast Orm proteins. Cell Rep, 43, 2024
8QOG	Cryo-EM structure of the yeast SPT-Orm2-Monomer complex 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ORM2 isoform 1, PYRIDOXAL-5'-PHOSPHATE, ... 著者 Schaefer, J, Koerner, C, Moeller, A, Froehlich, F. 登録日 2023-09-28 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The structure of the Orm2-containing serine palmitoyltransferase complex reveals distinct inhibitory potentials of yeast Orm proteins. Cell Rep, 43, 2024
7YHE	Crystal structure of the triple mutant CmnC-L136Q,S138G,D249Y in complex with alpha-KG 分子名称: 2-OXOGLUTARIC ACID, CmnC, FE (III) ION, ... 著者 Huang, S.J, Hsiao, Y.H, Lin, E.C, Hsiao, P.Y, Chang, C.Y. 登録日 2022-07-13 公開日 2023-07-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Crystal structure of the alpha-ketoglutarate-dependent non-heme iron oxygenase CmnC in capreomycin biosynthesis and its engineering to catalyze hydroxylation of the substrate enantiomer. Front Chem, 10, 2022
4WUL	Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 26bp DNA 分子名称: DNA (26-MER), Response regulator receiver domain protein 著者 Davlieva, M, Shamoo, Y. 登録日 2014-11-02 公開日 2015-05-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. Nucleic Acids Res., 43, 2015
8QTN	Cryo-EM structure of the apo yeast Ceramide Synthase 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, AMMONIUM ION, Ceramide synthase LAC1, ... 著者 Schaefer, J, Clausmeyer, L, Koerner, C, Moeller, A, Froehlich, F. 登録日 2023-10-12 公開日 2024-10-23 最終更新日 2025-03-26 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the yeast ceramide synthase. Nat.Struct.Mol.Biol., 32, 2025

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