PDB: 7404 件ウェブページステータス検索Chemie searchBIRD

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1PA4	Solution structure of a putative ribosome-binding factor from Mycoplasma pneumoniae (MPN156) 分子名称: Probable ribosome-binding factor A 著者 Rubin, S.M, Pelton, J.G, Yokota, H, Kim, R, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC) 登録日 2003-05-13 公開日 2004-03-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog. J.STRUCT.FUNCT.GENOM., 4, 2003
4V8A	The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Bulkley, D, Johnson, F.A, Steitz, T.A. 登録日 2011-12-05 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 The antibiotic thermorubin inhibits protein synthesis by binding to inter-subunit bridge b2a of the ribosome. J.Mol.Biol., 416, 2012
8XT1	Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline 分子名称: 16s rRNA, 39S ribosomal protein L22, mitochondrial, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2024-01-10 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
4V4X	Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Jenner, L, Yusupova, G, Rees, B, Moras, D, Yusupov, M. 登録日 2006-06-27 公開日 2014-07-09 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (5 Å) 主引用文献 Structural basis for messenger RNA movement on the ribosome. Nature, 444, 2006
8A3L	Structural insights into the binding of bS1 to the ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... 著者 D'Urso, G, Chat, S, Gillet, R, Giudice, E. 登録日 2022-06-08 公開日 2023-05-10 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 Structural insights into the binding of bS1 to the ribosome. Nucleic Acids Res., 51, 2023
7QIY	Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit. 分子名称: 1,4-DIAMINOBUTANE, 18S rRNA head, 40S head ribosomal protein eS19, ... 著者 Cottilli, P, Itoh, Y, Amunts, A. 登録日 2021-12-16 公開日 2022-06-15 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Cryo-EM structure and rRNA modification sites of a plant ribosome. Plant Commun., 3, 2022
7QIW	Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. 分子名称: 25S rRNA, 5.8S rRNA, 50S ribosomal protein L22, ... 著者 Cottilli, P, Itoh, Y, Amunts, A. 登録日 2021-12-16 公開日 2022-07-13 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.35 Å) 主引用文献 Cryo-EM structure and rRNA modification sites of a plant ribosome. Plant Commun., 3, 2022
4V9M	70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhou, J, Lancaster, L, Donohue, J.P, Noller, H.F. 登録日 2013-04-25 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science, 340, 2013
4YHH	Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Schedlbauer, A, Kaminishi, T, Ochoa-Lizarralde, B, Dhimole, N, Zhou, S, Lopez-Alonso, J.P, Connell, S.R, Fucini, P. 登録日 2015-02-27 公開日 2015-04-08 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.417 Å) 主引用文献 Structural characterization of an alternative mode of tigecycline binding to the bacterial ribosome. Antimicrob.Agents Chemother., 59, 2015
8ANY	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA 分子名称: 1,4-DIAMINOBUTANE, 12S mitochondrial rRNA, 16S mitochondrial rRNA, ... 著者 Singh, V, Itoh, Y, Amunts, A. 登録日 2022-08-06 公開日 2023-08-16 最終更新日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome. Nat.Struct.Mol.Biol., 2024
6ZQD	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... 著者 Cheng, J, Lau, B, Venuta, G.L, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2020-07-09 公開日 2020-09-23 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 90 S pre-ribosome transformation into the primordial 40 S subunit. Science, 369, 2020
8B5L	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Pauwels, E, Shewakramani, N.R, De Wijngaert, B, Vermeire, K, Das, K. 登録日 2022-09-23 公開日 2023-03-01 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative. Sci Adv, 9, 2023
8B6C	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147 分子名称: 28S rRNA, 4-[[9-(cyclohexylmethyl)-3-methylidene-5-(4-methylphenyl)sulfonyl-1,5,9-triazacyclododec-1-yl]sulfonyl]-~{N},~{N}-dimethyl-aniline, 5.8S rRNA, ... 著者 Pauwels, E, Shewakramani, N.R, De Wijngaert, B, Vermeire, K, Das, K. 登録日 2022-09-26 公開日 2023-02-22 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative. Sci Adv, 9, 2023
3JCN	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T. 登録日 2016-01-04 公開日 2016-03-09 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association. Sci Adv, 2, 2016
6ZQA	Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... 著者 Cheng, J, Lau, B, Venuta, G.L, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2020-07-09 公開日 2020-09-23 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 90 S pre-ribosome transformation into the primordial 40 S subunit. Science, 369, 2020
6CAE	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Pantel, L, Florin, T, Dobosz-Bartoszek, M, Racine, E, Sarciaux, M, Serri, M, Houard, J, Campagne, J.M, Marcia de Figueiredo, R, Midrier, C, Gaudriault, S, Givaudan, A, Lanois, A, Forst, S, Aumelas, A, Cotteaux-Lautard, C, Bolla, J.M, Vingsbo Lundberg, C, Huseby, D, Hughes, D, Villain-Guillot, P, Mankin, A.S, Polikanov, Y.S, Gualtieri, M. 登録日 2018-01-30 公開日 2018-04-18 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Odilorhabdins, Antibacterial Agents that Cause Miscoding by Binding at a New Ribosomal Site. Mol. Cell, 70, 2018
6Z6J	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6VWN	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. 登録日 2020-02-20 公開日 2020-06-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
8CBJ	Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex 分子名称: 20S pre-ribosomal RNA, 20S-pre-rRNA D-site endonuclease NOB1, 40S ribosomal protein S0-A, ... 著者 Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2023-01-25 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
6Q95	Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-02-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
6VWM	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. 登録日 2020-02-20 公開日 2020-06-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
8EVQ	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWC	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-22 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.45 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
7QIX	Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit. 分子名称: 18S rRNA body, 30S ribosomal protein S15, chloroplastic, ... 著者 Cottilli, P, Itoh, Y, Amunts, A. 登録日 2021-12-16 公開日 2022-06-15 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.53 Å) 主引用文献 Cryo-EM structure and rRNA modification sites of a plant ribosome. Plant Commun., 3, 2022
4CXG	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement 分子名称: 18S RRNA - H44, 18S RRNA - H5-H14, 18S RRNA - H8, ... 著者 Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T. 登録日 2014-04-07 公開日 2014-07-16 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement. Cell(Cambridge,Mass.), 158, 2014

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