PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2IVH	Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA 分子名称: 5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3', COLCIN-E7, ZINC ION 著者 Wang, Y.T, Yang, W.J, Li, C.L, Doudeva, L.G, Yuan, H.S. 登録日 2006-06-13 公開日 2007-01-02 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases. Nucleic Acids Res., 35, 2007
5LFS	Lambda-[Ru(bpy)2(dppz)]2+ bound to brominated DNA 分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*(CBR)P*GP*GP*C)-3'), ... 著者 Hall, J.P, Cardin, C.J. 登録日 2016-07-04 公開日 2017-02-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects. Chemistry, 23, 2017
1J46	3D Solution NMR Structure of the Wild Type HMG-BOX Domain of the Human Male Sex Determining Factor Sry Complexed to DNA 分子名称: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN 著者 Clore, G.M, Murphy, E.C. 登録日 2001-07-23 公開日 2001-10-03 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. J.Mol.Biol., 312, 2001
3E41	Q138F HincII bound to GTCGAC and 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
3E40	Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3'), CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
1EI4	B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE 著者 Minasov, G, Teplova, M, Nielsen, P, Wengel, J, Egli, M. 登録日 2000-02-24 公開日 2000-03-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Structural basis of cleavage by RNase H of hybrids of arabinonucleic acids and RNA. Biochemistry, 39, 2000
3E3Y	Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
6Y8L	Mycobacterium thermoresistibile GyrB21 in complex with novobiocin 分子名称: 1,2-ETHANEDIOL, DNA gyrase subunit B, NOVOBIOCIN, ... 著者 Henderson, S.R, Stevenson, C.E.M, Malone, B, Zholnerovych, Y, Mitchenall, L.A, Pichowicz, M, McGarry, D.H, Cooper, I.R, Charrier, C, Salisbury, A, Lawson, D.M, Maxwell, A. 登録日 2020-03-05 公開日 2020-08-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural and mechanistic analysis of ATPase inhibitors targeting mycobacterial DNA gyrase. J.Antimicrob.Chemother., 75, 2020
4XXO	Crystal Structure of Human APOBEC3A 分子名称: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3A, ZINC ION 著者 Bohn, M.F, Shandilya, S.M.D, Schiffer, C.A. 登録日 2015-01-30 公開日 2015-04-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.843 Å) 主引用文献 The ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization. Structure, 23, 2015
4HDV	Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2,6-diaminopurine 分子名称: 5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3', 5'-D(*GP*CP*CP*AP*TP*GP*(1AP)P*CP*TP*AP*GP*TP*A)-3', Alkyltransferase-like protein 1 著者 Tubbs, J.L, Tainer, J.A. 登録日 2012-10-02 公開日 2012-12-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.702 Å) 主引用文献 Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-{pi} interactions. Proc.Natl.Acad.Sci.USA, 109, 2012
4FO6	Crystal structure of the pre-catalytic ternary complex of polymerase lambda with a dATP analog opposite a templating T and an rCMP at the primer terminus. 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, 5'-D(*CP*AP*GP*TP*AP)-R(P*C)-3', 5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3', ... 著者 Gosavi, R.A, Moon, A.F, Kunkel, T.A, Pedersen, L.C, Bebenek, K. 登録日 2012-06-20 公開日 2012-07-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 The catalytic cycle for ribonucleotide incorporation by human DNA Pol lambda Nucleic Acids Res., 40, 2012
2WBU	CRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TARGET DNA 分子名称: 5'-D(*DGP*DAP*DGP*DGP*DCP*DGP*DTP* DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DAP*DCP*DGP*DCP* DCP*DTP*DC)-3', KRUEPPEL-LIKE FACTOR 4, ... 著者 Schuetz, A, Zocher, G, Carstanjen, D, Heinemann, U. 登録日 2009-03-05 公開日 2010-04-07 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The Structure of the Klf4 DNA-Binding Domain Links to Self-Renewal and Macrophage Differentiation. Cell.Mol.Life Sci., 68, 2011
6Y8N	Mycobacterium thermoresistibile GyrB21 in complex with Redx03863 分子名称: 1,2-ETHANEDIOL, 4-[(1~{S},5~{R})-6-azanyl-3-azabicyclo[3.1.0]hexan-3-yl]-6-fluoranyl-~{N}-methyl-2-(2-methylpyrimidin-5-yl)oxy-9~{H}-pyrimido[4,5-b]indol-8-amine, DNA gyrase subunit B, ... 著者 Henderson, S.R, Stevenson, C.E.M, Malone, B, Zholnerovych, Y, Mitchenall, L.A, Pichowicz, M, McGarry, D.H, Cooper, I.R, Charrier, C, Salisbury, A, Lawson, D.M, Maxwell, A. 登録日 2020-03-05 公開日 2020-08-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural and mechanistic analysis of ATPase inhibitors targeting mycobacterial DNA gyrase. J.Antimicrob.Chemother., 75, 2020
2P6R	Crystal structure of superfamily 2 helicase Hel308 in complex with unwound DNA 分子名称: 25-MER, 5'-D(*CP*TP*AP*GP*AP*GP*AP*CP*TP*AP*TP*CP*GP*AP*T)-3', afUHEL308 HELICASE 著者 Buettner, K, Nehring, S, Hopfner, K.P. 登録日 2007-03-19 公開日 2007-06-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for DNA duplex separation by a superfamily-2 helicase. Nat.Struct.Mol.Biol., 14, 2007
8GML	Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dG 分子名称: 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate), CALCIUM ION, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), ... 著者 Jung, H. 登録日 2023-03-26 公開日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.567 Å) 主引用文献 Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dA To Be Published
6Y8O	Mycobacterium smegmatis GyrB 22kDa ATPase sub-domain in complex with novobiocin 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DNA gyrase subunit B, ... 著者 Henderson, S.R, Stevenson, C.E.M, Malone, B, Zholnerovych, Y, Mitchenall, L.A, Pichowicz, M, McGarry, D.H, Cooper, I.R, Charrier, C, Salisbury, A, Lawson, D.M, Maxwell, A. 登録日 2020-03-05 公開日 2020-08-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural and mechanistic analysis of ATPase inhibitors targeting mycobacterial DNA gyrase. J.Antimicrob.Chemother., 75, 2020
1ZQ3	NMR Solution Structure of the Bicoid Homeodomain Bound to the Consensus DNA Binding Site TAATCC 分子名称: 5'-D(*CP*GP*GP*GP*GP*AP*TP*TP*AP*GP*AP*GP*C)-3', 5'-D(*GP*CP*TP*CP*TP*AP*AP*TP*CP*CP*CP*CP*G)-3', Homeotic bicoid protein 著者 Baird-Titus, J.M, Rance, M, Clark-Baldwin, K, Ma, J, Vrushank, D. 登録日 2005-05-18 公開日 2006-02-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the native K50 Bicoid homeodomain bound to the consensus TAATCC DNA-binding site. J.Mol.Biol., 356, 2006
5V0Q	Original engineered variant of I-OnuI meganuclease targeting the HIV integrase gene; harbors 49 point mutations relative to wild-type I-OnuI 分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-vHIVInt_v1 著者 Werther, R, Lambert, A.R. 登録日 2017-02-28 公開日 2017-09-27 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses. Protein Eng. Des. Sel., 30, 2017
4QQX	Crystal structure of T. fusca Cas3-ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ... 著者 Ke, A, Huo, Y, Nam, K.H. 登録日 2014-06-30 公開日 2014-08-20 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation. Nat.Struct.Mol.Biol., 21, 2014
1FHY	PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION 分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION, DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') 著者 Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S. 登録日 2000-08-02 公開日 2001-04-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. J.Mol.Biol., 308, 2001
5T8D	Engineered variant of I-OnuI meganuclease targeting the HIV integrase gene; harbors 47 point mutations relative to wild-type I-OnuI 分子名称: CALCIUM ION, DNA (26-MER), I-OnuI_e-vHIVInt_v2 著者 Stoddard, B.L, Werther, R, Lambert, A.R. 登録日 2016-09-07 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses. Protein Eng.Des.Sel., 30, 2017
2BAM	RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX). 分子名称: CALCIUM ION, DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), PROTEIN (ENDONUCLEASE BAMHI) 著者 Viadiu, H, Aggarwal, A.K. 登録日 1998-08-19 公開日 1999-10-31 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The role of metals in catalysis by the restriction endonuclease BamHI. Nat.Struct.Biol., 5, 1998
3AJL	Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:guanosine Base-pair in B-DNA with DAPI 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3', 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, MAGNESIUM ION 著者 Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2010-06-07 公開日 2011-04-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil J Nucleic Acids, 2010, 2010
8K25	Structure of Cas1-Cas2-dsDNA complex 分子名称: Cas1, DNA (5'-D(P*CP*AP*AP*TP*TP*TP*AP*AP*AP*TP*AP*GP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*C)-3'), ... 著者 Zhang, L.X, Feng, Y. 登録日 2023-07-12 公開日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of Cas1-Cas2 complex bound dsDNA To Be Published
1ECL	AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1). 分子名称: ESCHERICHIA COLI TOPOISOMERASE I 著者 Lima, C.D, Wang, J.C, Mondragon, A. 登録日 1995-05-05 公開日 1995-07-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature, 367, 1994

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