PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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1LUX	NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40) 分子名称: 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3' 著者 Stuart, J.W, Koshlap, K.M, Guenther, R.H, Agris, P.F. 登録日 2002-05-23 公開日 2003-09-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe). J.Mol.Biol., 334, 2003
8S8N	NMR structure of tanniamide in micellar DPC solution 分子名称: (~{Z},3~{R})-3-oxidanyldodec-5-enoic acid, Tanniamide 著者 Kovacs, B, Geudens, N, Martins, J.C. 登録日 2024-03-06 公開日 2025-02-26 実験手法 SOLUTION NMR 主引用文献 NMR structure of tanniamide in micellar DPC solution To be published
1LUU	NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40) 分子名称: 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3' 著者 Stuart, J.W, Koshlap, K.M, Guenther, R.H, Agris, P.F. 登録日 2002-05-23 公開日 2003-09-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe). J.Mol.Biol., 334, 2003
2TPT	STRUCTURAL AND THEORETICAL STUDIES SUGGEST DOMAIN MOVEMENT PRODUCES AN ACTIVE CONFORMATION OF THYMIDINE PHOSPHORYLASE 分子名称: SULFATE ION, THYMIDINE PHOSPHORYLASE 著者 Pugmire, M.J, Cook, W.J, Jasanoff, A, Walter, M.R, Ealick, S.E. 登録日 1997-11-24 公開日 1999-03-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural and theoretical studies suggest domain movement produces an active conformation of thymidine phosphorylase. J.Mol.Biol., 281, 1998
6K3Z	Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM) 分子名称: CRISPR-associated endonuclease Cas9, DNA (28-MER), DNA (5'-D(*AP*AP*AP*TP*GP*AP*TP*AP*TP*TP*G)-3'), ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-22 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K4P	Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM) 分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), PHOSPHATE ION, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-25 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K4U	Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM) 分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-27 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K4Q	Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM) 分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*CP*GP*GP*TP*AP*TP*TP*G)-3'), ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-26 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K57	Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM) 分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-28 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K4S	Crystal structure of xCas9 in complex with sgRNA and DNA (TGC PAM) 分子名称: CRISPR-associated endonuclease Cas9/Csn1, non-targeted DNA, sgRNA, ... 著者 Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q. 登録日 2019-05-26 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biol., 17, 2019
6K79	Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate. 分子名称: GLYCEROL, Glycerol kinase, TRIETHYLENE GLYCOL 著者 Koga, Y, Angkawidjaja, C, Matsumura, H, Hokao, R. 登録日 2019-06-06 公開日 2020-06-10 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1 To Be Published
7NQL	55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S16, ... 著者 Kummer, E, Schubert, K, Ban, N. 登録日 2021-03-01 公開日 2021-05-05 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell, 81, 2021
7NQH	55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S16, ... 著者 Kummer, E, Schubert, K, Ban, N. 登録日 2021-03-01 公開日 2021-05-05 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell, 81, 2021
8ANY	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA 分子名称: 1,4-DIAMINOBUTANE, 12S mitochondrial rRNA, 16S mitochondrial rRNA, ... 著者 Singh, V, Itoh, Y, Amunts, A. 登録日 2022-08-06 公開日 2023-08-16 最終更新日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome. Nat.Struct.Mol.Biol., 2024
8RXH	CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN 分子名称: (2S)-2-[2-[4-[[(2R,3S,4S)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid, 40S ribosomal protein S12, 40S ribosomal protein S14, ... 著者 Rajan, K.S, Yonath, A. 登録日 2024-02-07 公開日 2024-05-15 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification. Cell Rep, 43, 2024
8RXX	CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN 分子名称: 40S ribosomal protein S12, 40S ribosomal protein S14, 40S ribosomal protein S19-like protein, ... 著者 Rajan, K.S, Yonath, A. 登録日 2024-02-08 公開日 2024-05-15 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification. Cell Rep, 43, 2024
7NSI	55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Kummer, E, Schubert, K, Ban, N. 登録日 2021-03-07 公開日 2021-06-02 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell, 81, 2021
6TRD	Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... 著者 Koelsch, A, Radon, C, Baumert, A, Buerger, J, Mielke, T, Lisdat, F, Zouni, A, Wendler, P. 登録日 2019-12-18 公開日 2020-09-16 最終更新日 2025-04-09 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 Current limits of structural biology: The transient interaction between cytochrome c6 and photosystem I Curr.Opin.Struct.Biol., 2, 2020
8B0X	Translating 70S ribosome in the unrotated state (P and E, tRNAs) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fromm, S.A, O'Connor, K.M, Purdy, M, Bhatt, P.R, Loughran, G, Atkins, J.F, Jomaa, A, Mattei, S. 登録日 2022-09-08 公開日 2022-11-30 最終更新日 2025-04-16 実験手法 ELECTRON MICROSCOPY (1.55 Å) 主引用文献 The translating bacterial ribosome at 1.55 angstrom resolution generated by cryo-EM imaging services. Nat Commun, 14, 2023
3TQU	Structure of a HAM1 protein from Coxiella burnetii 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Non-canonical purine NTP pyrophosphatase 著者 Cheung, J, Franklin, M.C, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J. 登録日 2011-09-09 公開日 2011-09-21 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
5JC9	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-14 公開日 2016-07-06 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
5J7L	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-06 公開日 2016-07-27 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
4LEL	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-25 公開日 2014-08-06 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.90000033 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5JVG	The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 23S ribosomal RNA, 50S ribosomal protein L11, ... 著者 Krupkin, M, Wekselman, I, Matzov, D, Eyal, Z, Diskin Posner, Y, Rozenberg, H, Zimmerman, E, Bashan, A, Yonath, A. 登録日 2016-05-11 公開日 2016-11-09 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.428 Å) 主引用文献 Avilamycin and evernimicin induce structural changes in rProteins uL16 and CTC that enhance the inhibition of A-site tRNA binding. Proc.Natl.Acad.Sci.USA, 113, 2016
4D2K	Crystal structure of DREP2 CIDE domain 分子名称: DREP2 著者 Jang, T.H, Park, H.H, Kim, Y.G, Jeong, J.H. 登録日 2014-05-12 公開日 2015-05-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.302 Å) 主引用文献 CIDE domains form functionally important higher-order assemblies for DNA fragmentation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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