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5O1X
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Structure of Nrd1 RNA binding domain
分子名称: 1,2-ETHANEDIOL, Protein NRD1, THIOCYANATE ION
著者Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B.
登録日2017-05-19
公開日2017-08-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.
Nucleic Acids Res., 45, 2017
1I4W
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BU of 1i4w by Molmil
THE CRYSTAL STRUCTURE OF THE TRANSCRIPTION FACTOR SC-MTTFB OFFERS INTRIGUING INSIGHTS INTO MITOCHONDRIAL TRANSCRIPTION
分子名称: MITOCHONDRIAL REPLICATION PROTEIN MTF1, XENON
著者Schubot, F.D, Chen, C.-J, Rose, J.P, Dailey, T.A, Dailey, H.A, Wang, B.-C.
登録日2001-02-23
公開日2001-10-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription.
Protein Sci., 10, 2001
5FVC
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Structure of RNA-bound decameric HMPV nucleoprotein
分子名称: HMPV NUCLEOPROTEIN, RNA
著者Renner, M, Bertinelli, M, Leyrat, C, Paesen, G.C, Saraiva de Oliveira, L.F, Huiskonen, J.T, Grimes, J.M.
登録日2016-02-05
公開日2016-02-24
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (4.17 Å)
主引用文献Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
Elife, 5, 2016
6T9J
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SAGA Tra1 module
分子名称: Transcription factor SPT20, Transcription initiation factor TFIID subunit 12, Transcription-associated protein 1
著者Wang, H, Cheung, A, Cramer, P.
登録日2019-10-28
公開日2020-01-29
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of the transcription coactivator SAGA.
Nature, 577, 2020
4H5L
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BU of 4h5l by Molmil
Crystal Structure of Toscana Virus Nucleocapsid Protein Hexamer
分子名称: Nucleoprotein
著者Raymond, D.D, Smith, J.L.
登録日2012-09-18
公開日2012-11-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Phleboviruses encapsidate their genomes by sequestering RNA bases.
Proc.Natl.Acad.Sci.USA, 109, 2012
4H5Q
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Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded DNA
分子名称: 30-mer poly(T) DNA, Nucleocapsid protein
著者Raymond, D.D, Smith, J.L.
登録日2012-09-18
公開日2012-11-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Phleboviruses encapsidate their genomes by sequestering RNA bases.
Proc.Natl.Acad.Sci.USA, 109, 2012
8D37
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (25-MER), ...
著者Park, J, Yin, Y.W.
登録日2022-05-31
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D3R
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D42
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
5MHQ
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CCT068127 in complex with CDK2
分子名称: (2~{R},3~{S})-3-[[9-propan-2-yl-6-(pyridin-3-ylmethylamino)purin-2-yl]amino]pentan-2-ol, Cyclin-dependent kinase 2
著者Whittaker, S.R, Barlow, C, Martin, M.P, Mancusi, C, Wagner, S, Barrie, E, te Poele, R, Sharp, S, Brown, N, Wilson, S, Clarke, P, Walton, M.I, MacDonald, E, Blagg, J, Noble, M.E.M, Garrett, M.D, Workman, P.
登録日2016-11-25
公開日2017-12-20
最終更新日2018-03-14
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Molecular profiling and combinatorial activity of CCT068127: a potent CDK2 and CDK9 inhibitor.
Mol Oncol, 12, 2018
4H5M
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Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer
分子名称: Nucleocapsid protein, SULFATE ION
著者Raymond, D.D, Smith, J.L.
登録日2012-09-18
公開日2012-11-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Phleboviruses encapsidate their genomes by sequestering RNA bases.
Proc.Natl.Acad.Sci.USA, 109, 2012
6OD9
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BU of 6od9 by Molmil
Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
分子名称: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, CESIUM ION, MAGNESIUM ION, ...
著者Jones, C.P, Tran, B, Ferre-D'Amare, A.R.
登録日2019-03-26
公開日2019-07-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.102 Å)
主引用文献Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser.
Acta Crystallogr.,Sect.F, 75, 2019
4OY2
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BU of 4oy2 by Molmil
Crystal structure of TAF1-TAF7, a TFIID subcomplex
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Transcription initiation factor TFIID subunit 1, Transcription initiation factor TFIID subunit 7, ...
著者Bhattacharya, S, Lou, X, Rajashankar, K, Jacobson, R.H, Webb, P.
登録日2014-02-10
公開日2014-06-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural and functional insight into TAF1-TAF7, a subcomplex of transcription factor II D.
Proc.Natl.Acad.Sci.USA, 111, 2014
1TL6
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BU of 1tl6 by Molmil
Solution structure of T4 bacteriphage AsiA monomer
分子名称: 10 kDa anti-sigma factor
著者Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H.
登録日2004-06-09
公開日2005-06-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献T4 AsiA blocks DNA recognition by remodeling sigma70 region 4
Embo J., 23, 2004
1RVF
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BU of 1rvf by Molmil
FAB COMPLEXED WITH INTACT HUMAN RHINOVIRUS
分子名称: FAB 17-IA, HUMAN RHINOVIRUS 14 COAT PROTEIN
著者Smith, T.J.
登録日1996-09-05
公開日1998-02-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Neutralizing antibody to human rhinovirus 14 penetrates the receptor-binding canyon.
Nature, 383, 1996
2JZ3
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BU of 2jz3 by Molmil
SOCS box elonginBC ternary complex
分子名称: Suppressor of cytokine signaling 3, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2
著者Babon, J.J, Sabo, J, Soetopo, A, Yao, S, Bailey, M.F, Zhang, J, Nicola, N.A, Norton, R.S.
登録日2007-12-27
公開日2008-09-23
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase
J.Mol.Biol., 381, 2008
3QER
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BU of 3qer by Molmil
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dATP Opposite Difluorotoluene Nucleoside
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural Basis for Differential Insertion Kinetics of dNMPs Opposite a Difluorotoluene Nucleotide Residue.
Biochemistry, 51, 2012
2N23
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BU of 2n23 by Molmil
NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the N-terminal activation domain of EKLF (TAD1)
分子名称: Krueppel-like factor 1, RNA polymerase II transcription factor B subunit 1
著者Lecoq, L, Morse, T, Raiola, L, Arseneault, G, Omichinski, J.
登録日2015-04-27
公開日2016-04-27
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Characterization of the Complex between the N-terminal Transactivation Domain of EKLF and the p62/Tfb1 subunit of TFIIH
To be Published
6EHT
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BU of 6eht by Molmil
Modulation of PCNA sliding surface by p15PAF suggests a suppressive mechanism for cisplatin-induced DNA lesion bypass by pol eta holoenzyme
分子名称: DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3'), PCNA-associated factor, ...
著者De March, M, Barrera-Vilarmau, S, Mentegari, E, Merino, N, Bressan, E, Maga, G, Crehuet, R, Onesti, S, Blanco, F.J, De Biasio, A.
登録日2017-09-15
公開日2018-08-08
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献p15PAF binding to PCNA modulates the DNA sliding surface.
Nucleic Acids Res., 46, 2018
8FLM
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Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
分子名称: 1-[(2-chloro-6-fluorophenyl)methyl]-3,3-dimethyl-2-oxo-N-[(2,4,6-trifluorophenyl)methyl]-2,3-dihydro-1H-indole-6-carboxamide, 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, ...
著者Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
登録日2022-12-21
公開日2023-11-01
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
8FLK
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Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
分子名称: 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, cGAMP
著者Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
登録日2022-12-21
公開日2023-11-01
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
8FLI
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BU of 8fli by Molmil
Cryo-EM structure of a group II intron immediately before branching
分子名称: Group II Intron, MAGNESIUM ION, Maturase reverse transcriptase
著者Haack, D.B, Rudolfs, B.G, Zhang, C, Lyumkis, D, Toor, N.
登録日2022-12-21
公開日2023-12-13
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of branching during RNA splicing.
Nat.Struct.Mol.Biol., 31, 2024
5JZE
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BU of 5jze by Molmil
Erve virus viral OTU domain protease in complex with mouse ISG15
分子名称: CITRATE ANION, RNA-dependent RNA polymerase, Ubiquitin-like protein ISG15, ...
著者Deaton, M.K, Dzimianski, J.V, Pegan, S.D.
登録日2016-05-16
公開日2016-10-19
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Biochemical and Structural Insights into the Preference of Nairoviral DeISGylases for Interferon-Stimulated Gene Product 15 Originating from Certain Species.
J.Virol., 90, 2016
2HHW
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ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation
分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3', ...
著者Warren, J.J, Forsberg, L.J, Beese, L.S.
登録日2006-06-28
公開日2006-12-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献The structural basis for the mutagenicity of O6-methyl-guanine lesions.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2VP3
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DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, VP39
著者Hodel, A.E, Gershon, P.D, Quiocho, F.A.
登録日1996-12-16
公開日1997-09-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Specific protein recognition of an mRNA cap through its alkylated base.
Nat.Struct.Biol., 4, 1997

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