PDB: 1546 件ウェブページステータス検索Chemie searchBIRD

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5U9G	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Svidritskiy, E, Madireddy, R, Diaz-Avalos, R, Grant, T, Grigorieff, N, Sousa, D, Korostelev, A.A. 登録日 2016-12-16 公開日 2017-03-22 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanism of ribosome rescue by ArfA and RF2. Elife, 6, 2017
8EMM	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Watson, Z.L, Cate, J.H.D. 登録日 2022-09-28 公開日 2023-05-31 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates. Nat.Chem., 15, 2023
5TGM	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J, Yusupov, M. 登録日 2016-09-28 公開日 2017-01-18 最終更新日 2022-12-07 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5V8I	Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Gregory, S.T, Jogl, G. 登録日 2017-03-22 公開日 2018-03-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17 To be published
8EVQ	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EVS	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.62 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWB	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-22 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWC	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-22 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.45 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
5UYM	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
8EYQ	30S_delta_ksgA_h44_inactive_conformation 分子名称: 16S_rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Ortega, J, Sun, J. 登録日 2022-10-28 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion. Nat.Struct.Mol.Biol., 30, 2023
5UYQ	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
8EYT	30S_delta_ksgA+KsgA complex 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Sun, J, Kinman, L.F, Jahagirdar, D, Ortega, J, Davis, J.H. 登録日 2022-10-28 公開日 2023-09-06 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion. Nat.Struct.Mol.Biol., 30, 2023
8EVT	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
5UQ8	70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ("out" conformation) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M. 登録日 2017-02-07 公開日 2018-03-07 最終更新日 2018-03-21 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel. Structure, 26, 2018
5UYP	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5UYK	70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5UYL	70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-14 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity. Nature, 546, 2017
5T2C	CryoEM structure of the human ribosome at 3.6 Angstrom resolution 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
8FIZ	Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Florez Ariza, A, Wee, L, Tong, A, Canari, C, Grob, P, Nogales, E, Bustamante, C. 登録日 2022-12-18 公開日 2023-03-29 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery. Cell, 186, 2023
8FON	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2023-01-02 公開日 2023-03-29 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.64 Å) 主引用文献 Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches. J.Biol.Chem., 299, 2023
8FOM	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2023-01-02 公開日 2023-03-29 最終更新日 2023-04-26 実験手法 X-RAY DIFFRACTION (3.58 Å) 主引用文献 Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches. J.Biol.Chem., 299, 2023
5TZS	Architecture of the yeast small subunit processome 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 3' domain-associated, ... 著者 Chaker-Margot, M, Barandun, J, Hunziker, M, Klinge, S. 登録日 2016-11-22 公開日 2016-12-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Architecture of the yeast small subunit processome. Science, 355, 2017
8FR8	Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex 分子名称: 16S rRNA (1511-MER), 23S rRNA (3119-MER), 30S ribosomal protein S10, ... 著者 Majumdar, S, Sharma, M.R, Manjari, S.R, Banavali, N.K, Agrawal, R.K. 登録日 2023-01-06 公開日 2023-05-17 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.76 Å) 主引用文献 Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation. Proc.Natl.Acad.Sci.USA, 120, 2023
5VPP	The 70S P-site tRNA SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VYC	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A. 登録日 2017-05-24 公開日 2017-07-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1. Cell Rep, 20, 2017

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