PDB: 1466 件ウェブページステータス検索Chemie searchBIRD

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2ZVO	NEMO CoZi domain in complex with diubiquitin in C2 space group 分子名称: NF-kappa-B essential modulator, UBC protein 著者 Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I. 登録日 2008-11-12 公開日 2009-03-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation Cell(Cambridge,Mass.), 136, 2009
3DBH	Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190Ala-NEDD8Ala72Arg) 分子名称: NEDD8, NEDD8-activating enzyme E1 catalytic subunit, NEDD8-activating enzyme E1 regulatory subunit, ... 著者 Souphron, J, Schulman, B.A. 登録日 2008-05-31 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry, 47, 2008
3C0R	Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin 分子名称: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1 著者 Messick, T.E, Marmorstein, R. 登録日 2008-01-21 公開日 2008-02-19 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (2.315 Å) 主引用文献 Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein J.Biol.Chem., 283, 2008
2Z59	Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin 分子名称: Protein ADRM1, Ubiquitin 著者 Chen, X, Schreiner, P, Groll, M, Walters, K.J. 登録日 2007-07-01 公開日 2008-05-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. Nature, 453, 2008
3BY4	Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin 分子名称: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1 著者 Messick, T.E, Marmorstein, R. 登録日 2008-01-15 公開日 2008-02-19 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein J.Biol.Chem., 283, 2008
3DBR	Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190Gln-NEDD8Ala72Arg) 分子名称: NEDD8, NEDD8-activating enzyme E1 catalytic subunit, NEDD8-activating enzyme E1 regulatory subunit, ... 著者 Souphron, J, Schulman, B.A. 登録日 2008-06-02 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry, 47, 2008
3A1Q	Crystal structure of the mouse RAP80 UIMs in complex with Lys63-linked di-ubiquitin 分子名称: Ubiquitin, Ubiquitin interaction motif-containing protein 1 著者 Sato, Y, Yoshikawa, A, Mimura, H, Yamashita, M, Yamagata, A, Fukai, S. 登録日 2009-04-21 公開日 2009-07-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80 Embo J., 28, 2009
3AI5	Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein 分子名称: 1,2-ETHANEDIOL, yeast enhanced green fluorescent protein,Ubiquitin 著者 Suzuki, N, Wakatsuki, S, Kawasaki, M. 登録日 2010-05-10 公開日 2010-09-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystallization of small proteins assisted by green fluorescent protein Acta Crystallogr.,Sect.D, 66, 2010
4FBJ	Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8 分子名称: CHLORIDE ION, Hypothetical protein, NEDD8 著者 Crow, A, Banfield, M.J. 登録日 2012-05-23 公開日 2012-06-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012
4GIV	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183 分子名称: 3-(pyridin-3-yl)propyl (2S)-1-[(3-nitrophenyl)sulfonyl]piperidine-2-carboxylate, FORMIC ACID, Ubiquitin-like protein SMT3, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-08-09 公開日 2012-09-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4GGQ	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with CJ40 分子名称: 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-08-07 公開日 2012-08-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4FJV	Crystal Structure of Human Otubain2 and Ubiquitin Complex 分子名称: ETHANAMINE, GLYCEROL, Polyubiquitin-C, ... 著者 Altun, M, Walter, T.S, Kramer, H.B, Iphofer, A, David, Y, Komsany, A, Ternette, N, Nicholson, B, Navon, A, Stuart, D.I, Ren, J, Kessler, B.M. 登録日 2012-06-12 公開日 2013-06-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.047 Å) 主引用文献 The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. Plos One, 10, 2015
4HCN	Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ... 著者 Yao, Q, Cui, J, Zhu, Y, Shao, F. 登録日 2012-09-30 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4HCP	crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 分子名称: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ... 著者 Yao, Q, Shao, F. 登録日 2012-10-01 公開日 2012-11-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4FN2	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ37 分子名称: Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase, ethyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-06-19 公開日 2012-08-01 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4F8C	Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8 分子名称: 1,2-ETHANEDIOL, Cycle Inhibiting Factor, NEDD8 著者 Crow, A, Banfield, M. 登録日 2012-05-17 公開日 2012-06-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012
4G50	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ168 分子名称: 1,2-ETHANEDIOL, 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, FORMIC ACID, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-07-17 公開日 2012-08-01 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4HXD	Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases 分子名称: 1.7.6 3-bromanylpropan-1-amine, Polyubiquitin-C, RNA-directed RNA polymerase L, ... 著者 Capodagli, G.C, Pegan, S.D. 登録日 2012-11-09 公開日 2013-02-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases. J.Virol., 87, 2013
5C7M	CRYSTAL STRUCTURE OF E3 LIGASE ITCH WITH A UB VARIANT 分子名称: E3 ubiquitin-protein ligase Itchy homolog, Polyubiquitin-C 著者 Walker, J.R, Hu, J, Dong, A, Wernimont, A, Zhang, W, Sidhu, S, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Tong, Y, Structural Genomics Consortium (SGC) 登録日 2015-06-24 公開日 2016-03-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes. Mol.Cell, 62, 2016
5C23	Parkin (S65DUblR0RBR) 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ... 著者 Kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H. 登録日 2015-06-15 公開日 2015-07-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis. Embo J., 34, 2015
5CHV	Crystal structure of USP18-ISG15 complex 分子名称: CHLORIDE ION, SULFATE ION, Ubiquitin-like protein ISG15, ... 著者 Fritz, G, Basters, A. 登録日 2015-07-10 公開日 2016-09-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.005 Å) 主引用文献 Structural basis of the specificity of USP18 toward ISG15. Nat. Struct. Mol. Biol., 24, 2017
5C1Z	Parkin (UblR0RBR) 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ... 著者 kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H. 登録日 2015-06-15 公開日 2015-07-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis. Embo J., 34, 2015
5C7J	CRYSTAL STRUCTURE OF NEDD4 WITH A UB VARIANT 分子名称: E3 ubiquitin-protein ligase NEDD4, Polyubiquitin-C 著者 Walker, J.R, Hu, J, Dong, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Tong, Y, Structural Genomics Consortium (SGC) 登録日 2015-06-24 公開日 2016-03-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes. Mol.Cell, 62, 2016
5CVM	USP46~ubiquitin BEA covalent complex 分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 46, ZINC ION 著者 Harris, S.F, Yin, J. 登録日 2015-07-27 公開日 2015-10-07 最終更新日 2015-11-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Insights into WD-Repeat 48 Activation of Ubiquitin-Specific Protease 46. Structure, 23, 2015
5CRA	Structure of the SdeA DUB Domain 分子名称: METHYL 4-AMINOBUTANOATE, Polyubiquitin-B, SULFATE ION, ... 著者 Sheedlo, M.J, Qiu, J, Luo, Z.Q, Das, C. 登録日 2015-07-22 公開日 2015-11-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination. Proc.Natl.Acad.Sci.USA, 112, 2015

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