Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7T08
DownloadVisualize
BU of 7t08 by Molmil
Cryptococcus neoformans protein farnesyltransferase in complex with FPP and inhibitor 2q
分子名称: (2R)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, 1,2-ETHANEDIOL, 4-{[5-({(2S)-2-butyl-5-oxo-4-[3-(trifluoromethoxy)phenyl]piperazin-1-yl}methyl)-1H-imidazol-1-yl]methyl}-2-fluorobenzonitrile, ...
著者Wang, Y, Shi, Y, Beese, L.S.
登録日2021-11-29
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Structure-Guided Discovery of Potent Antifungals that Prevent Ras Signaling by Inhibiting Protein Farnesyltransferase.
J.Med.Chem., 65, 2022
2XP5
DownloadVisualize
BU of 2xp5 by Molmil
DISCOVERY OF CELL-ACTIVE PHENYL-IMIDAZOLE PIN1 INHIBITORS BY STRUCTURE-GUIDED FRAGMENT EVOLUTION
分子名称: 5-METHYL-2-PHENYL-1H-IMIDAZOLE-4-CARBOXYLIC ACID, DODECAETHYLENE GLYCOL, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1
著者Potter, A, Oldfield, V, Nunns, C, Fromont, C, Ray, S, Northfield, C.J, Bryant, C.J, Scrace, S.F, Robinson, D, Matossova, N, Baker, L, Dokurno, P, Surgenor, A.E, Davis, B.E, Richardson, C.M, Murray, J.B, Moore, J.D.
登録日2010-08-25
公開日2011-01-12
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery of Cell-Active Phenyl-Imidazole Pin1 Inhibitors by Structure-Guided Fragment Evolution.
Bioorg.Med.Chem.Lett., 20, 2010
3ITT
DownloadVisualize
BU of 3itt by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329K in complex with L-rhamnose
分子名称: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
著者Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
登録日2009-08-28
公開日2010-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
7SP4
DownloadVisualize
BU of 7sp4 by Molmil
In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 2 at 3.71A resolution
分子名称: Gene 3 protein, Gene 5 protein, Gene 7 protein
著者Li, F, Cingolani, G, Hou, C, Yang, R.
登録日2021-11-02
公開日2022-11-09
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
7QKJ
DownloadVisualize
BU of 7qkj by Molmil
In vitro assembled 266/297 - 391 tau filaments with MgCl2 and NaCl (14b)
分子名称: Microtubule-associated protein tau
著者Lovestam, S, Scheres, S.H.W.
登録日2021-12-17
公開日2022-03-23
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Assembly of recombinant tau into filaments identical to those of Alzheimer's disease and chronic traumatic encephalopathy.
Elife, 11, 2022
7SVU
DownloadVisualize
BU of 7svu by Molmil
TnsBctd-TnsC-TniQ complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (28-MER), DNA (29-MER), ...
著者Park, J, Tsai, A.W.T, Kellogg, E.H.
登録日2021-11-19
公開日2022-11-23
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structures of the holo CRISPR RNA-guided transposon integration complex
Nature, 613, 2023
7QDN
DownloadVisualize
BU of 7qdn by Molmil
Structure of human liver pyruvate kinase from which the B domain has been deleted
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, OXALIC ACID, ...
著者Lulla, A, Hyvonen, M.
登録日2021-11-27
公開日2022-03-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.695 Å)
主引用文献Anthraquinone derivatives as ADP-competitive inhibitors of liver pyruvate kinase.
Eur.J.Med.Chem., 234, 2022
7TD5
DownloadVisualize
BU of 7td5 by Molmil
Structure of human PRC2-EZH1 containing phosphorylated SUZ12
分子名称: Histone-lysine N-methyltransferase EZH1, Polycomb protein EED, Polycomb protein SUZ12, ...
著者Gong, L, Jiao, L, Liu, X.
登録日2021-12-30
公開日2022-11-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.994 Å)
主引用文献CK2-mediated phosphorylation of SUZ12 promotes PRC2 function by stabilizing enzyme active site.
Nat Commun, 13, 2022
3IVX
DownloadVisualize
BU of 3ivx by Molmil
Crystal structure of pantothenate synthetase in complex with 2-(2-(benzofuran-2-ylsulfonylcarbamoyl)-5-methoxy-1H-indol-1-yl)acetic acid
分子名称: 1,2-ETHANEDIOL, ETHANOL, GLYCEROL, ...
著者Silvestre, H.L, Hung, A.W, Wen, S, Ciulli, A, Blundell, T.L, Abell, C.
登録日2009-09-02
公開日2009-10-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Application of fragment growing and fragment linking to the discovery of inhibitors of Mycobacterium tuberculosis pantothenate synthetase.
Angew.Chem.Int.Ed.Engl., 48, 2009
2MD0
DownloadVisualize
BU of 2md0 by Molmil
Solution structure of ShK-like immunomodulatory peptide from Ancylostoma caninum (hookworm)
分子名称: AcK1
著者Chhabra, S, Swarbrick, J.D, Mohanty, B, Chang, S.C, Chandy, G.K, Pennington, M.W, Norton, R.S.
登録日2013-08-28
公開日2014-07-02
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Kv1.3 channel-blocking immunomodulatory peptides from parasitic worms: implications for autoimmune diseases.
Faseb J., 28, 2014
2XW1
DownloadVisualize
BU of 2xw1 by Molmil
Human serum albumin complexed with dansyl-L-norvaline
分子名称: DANSYL-L-NORVALINE, SERUM ALBUMIN
著者Ryan, A.J, Curry, S.
登録日2010-10-28
公開日2010-11-10
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin.
J.Struct.Biol., 174, 2011
7AZA
DownloadVisualize
BU of 7aza by Molmil
Perdeuterated E65Q-TIM complexed with PHOSPHOGLYCOLOHYDROXAMATE
分子名称: PHOSPHOGLYCOLOHYDROXAMIC ACID, Triosephosphate isomerase
著者Kelpsas, V, Caldararu, O, von Wachenfeldt, C, Oksanen, E.
登録日2020-11-16
公開日2021-07-28
最終更新日2024-05-01
実験手法NEUTRON DIFFRACTION (1.1 Å), X-RAY DIFFRACTION
主引用文献Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps.
Iucrj, 8, 2021
8Q84
DownloadVisualize
BU of 8q84 by Molmil
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
分子名称: DASH complex subunit ASK1, DASH complex subunit DAD1, DASH complex subunit DAD2, ...
著者Muir, K.W, Barford, D.
登録日2023-08-17
公開日2023-12-06
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Structural mechanism of outer kinetochore Dam1-Ndc80 complex assembly on microtubules.
Science, 382, 2023
2M9V
DownloadVisualize
BU of 2m9v by Molmil
Structure of Saccharomyces cerevisiae Est3 protein
分子名称: Telomere replication protein EST3
著者Rao, T, Armstrong, G.S, Wuttke, D.S.
登録日2013-06-21
公開日2013-12-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of Est3 reveals a bimodal surface with differential roles in telomere replication.
Proc.Natl.Acad.Sci.USA, 111, 2014
7B1Z
DownloadVisualize
BU of 7b1z by Molmil
Virulence-associated protein VapB from the intracellular pathogen Rhodococcus equi
分子名称: GLYCEROL, NITRATE ION, Virulence associated protein VapB
著者Geerds, C, Niemann, H.H.
登録日2020-11-25
公開日2021-07-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Conformational changes of loops highlight a potential binding site in Rhodococcus equi VapB.
Acta Crystallogr.,Sect.F, 77, 2021
7AZ4
DownloadVisualize
BU of 7az4 by Molmil
Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID
分子名称: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase
著者Kelpsas, V, Caldararu, O, von Wachenfeldt, C, Oksanen, E.
登録日2020-11-16
公開日2021-07-28
最終更新日2024-05-01
実験手法NEUTRON DIFFRACTION (1.15 Å), X-RAY DIFFRACTION
主引用文献Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps.
Iucrj, 8, 2021
7KMX
DownloadVisualize
BU of 7kmx by Molmil
The capsid of Myoviridae Phage XM1
分子名称: Major capsid protein, Minor capsid protein
著者Wang, Z, Klose, T, Jiang, W, Kuhn, R.J.
登録日2020-11-03
公開日2021-11-10
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of Vibrio phage XM1, a simple contractile DNA injection machine
Biorxiv, 2021
7SPU
DownloadVisualize
BU of 7spu by Molmil
In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution
分子名称: Gene 3 protein, Gene 5 protein, Gene 7 protein
著者Li, F, Cingolani, G, Hou, C, Yang, R.
登録日2021-11-03
公開日2022-11-23
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
2XZU
DownloadVisualize
BU of 2xzu by Molmil
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND AN OXIDIZED PYRIMIDINE CONTAINING DNA AT 310K
分子名称: 5'-D(*CP*TP*CP*TP*TP*TP*VETP*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*G*A)-3', FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE, ...
著者Lebihan, Y.V, Izquierdo, M.A, Coste, F, Culard, F, Gehrke, T.H, Essalhi, K, Aller, P, Carrel, T, Castaing, B.
登録日2010-11-29
公開日2011-10-05
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献5-Hydroxy-5-Methylhydantoin DNA Lesion, a Molecular Trap for DNA Glycosylases
Nucleic Acids Res., 39, 2011
7B0I
DownloadVisualize
BU of 7b0i by Molmil
Structure of a minimal SF3B core in complex with spliceostatin A (form II)
分子名称: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3,Splicing factor 3B subunit 3,Splicing factor 3B subunit 3, ...
著者Cretu, C, Pena, V.
登録日2020-11-19
公開日2021-08-04
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.
Nat Commun, 12, 2021
7KFQ
DownloadVisualize
BU of 7kfq by Molmil
Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to 1H-Indole-3-Carboxylic Acid
分子名称: 1H-INDOLE-3-CARBOXYLIC ACID, SULFATE ION, Transcriptional regulator, ...
著者Walton, W.G, Redinbo, M.R, Dangl, J.L.
登録日2020-10-14
公開日2021-11-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome.
Nat Microbiol, 7, 2022
8Q1X
DownloadVisualize
BU of 8q1x by Molmil
Structural analysis of PLD3 reveals insights into the mechanism of lysosomal 5' exonuclease-mediated nucleic acid degradation
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-3' exonuclease PLD3, ...
著者Roske, Y, Daumke, O, Damme, M.
登録日2023-08-01
公開日2023-12-06
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural analysis of PLD3 reveals insights into the mechanism of lysosomal 5' exonuclease-mediated nucleic acid degradation.
Nucleic Acids Res., 52, 2024
7KFO
DownloadVisualize
BU of 7kfo by Molmil
Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Indole 3 acetic acid
分子名称: 1H-INDOL-3-YLACETIC ACID, SULFATE ION, Transcriptional regulator, ...
著者Walton, W.G, Redinbo, M.R, Dangl, J.L.
登録日2020-10-14
公開日2021-11-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome.
Nat Microbiol, 7, 2022
7QCO
DownloadVisualize
BU of 7qco by Molmil
The structure of Photosystem I tetramer from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, CHLOROPHYLL A, ...
著者Semchonok, D.A, Mondal, J, Cooper, J.C, Schlum, K, Li, M, Amin, M, Sorzano, C.O.S, Ramirez-Aportela, E, Kastritis, P.L, Boekema, E.J, Guskov, A, Bruce, B.D.
登録日2021-11-24
公開日2022-04-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium.
Plant Commun., 3, 2022
7SWW
DownloadVisualize
BU of 7sww by Molmil
SARS-CoV-2 Spike NTD in complex with neutralizing Fab SARS2-57 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-57 Fv heavy chain, ...
著者Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
登録日2021-11-21
公開日2022-11-23
最終更新日2023-02-01
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献A protective antibody targeting the N-terminal domain of SARS-CoV-2 spike recognizes most emerging variants
To Be Published

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon