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PDB: 534 件

2MI8
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Solution structure of lysine-free (K0) ubiquitin
分子名称: Ubiquitin
著者Huang, T, Li, J.R, Byrd, A.R.
登録日2013-12-09
公開日2014-04-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of lysine-free (K0) ubiquitin.
Protein Sci., 23, 2014
2JZZ
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BU of 2jzz by Molmil
Solid-State NMR Structure of Microcrystalline Ubiquitin
分子名称: Ubiquitin
著者Manolikas, T, Herrmann, T, Meier, B.H.
登録日2008-01-22
公開日2008-03-25
最終更新日2024-05-08
実験手法SOLID-STATE NMR
主引用文献Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.
J.Am.Chem.Soc., 130, 2008
2LVP
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BU of 2lvp by Molmil
gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin
分子名称: E3 ubiquitin-protein ligase AMFR, Ubiquitin
著者Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
登録日2012-07-09
公開日2012-11-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2RU6
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The pure alternative state of ubiquitin
分子名称: Ubiquitin
著者Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R.
登録日2013-12-04
公開日2014-02-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme
Biochemistry, 53, 2014
2RSU
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BU of 2rsu by Molmil
Alternative structure of Ubiquitin
分子名称: Ubiquitin
著者Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R.
登録日2012-06-15
公開日2013-03-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin
Biochemistry, 52, 2013
2MBB
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BU of 2mbb by Molmil
Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex
分子名称: Immunoglobulin G-binding protein G/DNA polymerase iota fusion protein, Polyubiquitin-B
著者Wang, S, Zhou, P.
登録日2013-07-29
公開日2014-06-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Sparsely-sampled, high-resolution 4-D omit spectra for detection and assignment of intermolecular NOEs of protein complexes.
J.Biomol.Nmr, 59, 2014
6OQ2
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BU of 6oq2 by Molmil
NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin
分子名称: Ubiquitin
著者Boughton, A.J, Fushman, D.
登録日2019-04-25
公開日2019-10-23
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1.
Structure, 28, 2020
2LVQ
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gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin
分子名称: E3 ubiquitin-protein ligase AMFR, Ubiquitin
著者Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
登録日2012-07-09
公開日2012-11-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2MCN
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BU of 2mcn by Molmil
Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications
分子名称: CD2-associated protein, Ubiquitin
著者Ortega-Roldan, J, Salmon, L, Azuaga, A, Blackledge, M, Van Nuland, N.
登録日2013-08-22
公開日2014-02-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications.
Plos One, 8, 2013
2MJ5
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BU of 2mj5 by Molmil
Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin
分子名称: Next to BRCA1 gene 1 protein, Polyubiquitin-C
著者Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
登録日2013-12-25
公開日2014-04-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014
5VF0
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Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin
分子名称: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION
著者Hu, Q, Botuyan, M.V, Mer, G.
登録日2017-04-06
公開日2017-05-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.
Mol. Cell, 66, 2017
6UYJ
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hRpn13:hRpn2:K48-diubiquitin
分子名称: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin
著者Lu, X, Walters, K.J.
登録日2019-11-13
公開日2020-03-11
最終更新日2020-05-20
実験手法SOLUTION NMR
主引用文献An Extended Conformation for K48 Ubiquitin Chains Revealed by the hRpn2:Rpn13:K48-Diubiquitin Structure.
Structure, 28, 2020
2MRE
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BU of 2mre by Molmil
NMR structure of the Rad18-UBZ/ubiquitin complex
分子名称: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-C, ZINC ION
著者Rizzo, A.A, Salerno, P.E, Bezsonova, I, Korzhnev, D.M.
登録日2014-07-03
公開日2014-10-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR Structure of the Human Rad18 Zinc Finger in Complex with Ubiquitin Defines a Class of UBZ Domains in Proteins Linked to the DNA Damage Response.
Biochemistry, 53, 2014
2MOR
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BU of 2mor by Molmil
A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings
分子名称: Ubiquitin
著者Camilloni, C, Vendruscolo, M.
登録日2014-04-29
公開日2014-06-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings.
J.Phys.Chem.B, 119, 2015
6V5D
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BU of 6v5d by Molmil
EROS3 RDC and NOE Derived Ubiquitin Ensemble
分子名称: Ubiquitin
著者Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L.
登録日2019-12-04
公開日2020-01-01
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Enhancing NMR derived ensembles with kinetics on multiple timescales.
J.Biomol.Nmr, 74, 2020
2N2K
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BU of 2n2k by Molmil
Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand
分子名称: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin
著者Liu, Z, Gong, Z, Tang, C.
登録日2015-05-10
公開日2015-07-08
最終更新日2015-09-23
実験手法SOLUTION NMR
主引用文献Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition.
Elife, 4, 2015
1ZGU
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BU of 1zgu by Molmil
Solution structure of the human Mms2-Ubiquitin complex
分子名称: Ubiquitin, Ubiquitin-conjugating enzyme E2 variant 2
著者Lewis, M.J, Saltibus, L.F, Hau, D.D, Xiao, W, Spyracopoulos, L.
登録日2005-04-22
公開日2006-04-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2.
J.Biomol.Nmr, 34, 2006
6UYI
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hRpn13:hRpn2:K48-diubiquitin
分子名称: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin
著者Lu, X, Walters, K.J.
登録日2019-11-13
公開日2020-03-11
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献An Extended Conformation for K48 Ubiquitin Chains Revealed by the hRpn2:Rpn13:K48-Diubiquitin Structure.
Structure, 28, 2020
2MWS
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BU of 2mws by Molmil
Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1
分子名称: DNA damage-inducible protein 1, Ubiquitin
著者Fushman, D, Nowicka, U, Walker, O.
登録日2014-11-23
公開日2015-03-25
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
2NR2
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BU of 2nr2 by Molmil
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins
分子名称: Ubiquitin
著者Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M.
登録日2006-11-01
公開日2007-05-08
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
J.Biomol.Nmr, 37, 2007
2K8C
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BU of 2k8c by Molmil
Solution structure of PLAA family ubiquitin binding domain (PFUC) trans isomer in complex with ubiquitin
分子名称: Phospholipase A-2-activating protein, Ubiquitin
著者Fu, Q.S, Zhou, C.J, Gao, H.C, Lin, D.H, Hu, H.Y.
登録日2008-09-04
公開日2009-05-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for Ubiquitin Recognition by a Novel Domain from Human Phospholipase A2-activating Protein.
J.Biol.Chem., 284, 2009
2K6D
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BU of 2k6d by Molmil
CIN85 Sh3-C domain in complex with ubiquitin
分子名称: SH3 domain-containing kinase-binding protein 1, Ubiquitin
著者Forman-Kay, J, Bezsonova, I.
登録日2008-07-07
公開日2008-08-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Interactions between the three CIN85 SH3 domains and ubiquitin: implications for CIN85 ubiquitination.
Biochemistry, 47, 2008
6UD0
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BU of 6ud0 by Molmil
Solution-state NMR structural ensemble of human Tsg101 UEV in complex with K63-linked diubiquitin
分子名称: Tumor susceptibility gene 101 protein, Ubiquitin
著者Strickland, M, Watanabe, S, Bonn, S.M, Camara, C.M, Fushman, D, Carter, C.A, Tjandra, N.
登録日2019-09-18
公開日2021-03-17
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Tsg101/ESCRT-I Recruitment Regulated by the Dual Binding Modes of K63-Linked Diubiquitin
Structure, 2021
5YMY
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BU of 5ymy by Molmil
The structure of the complex between Rpn13 and K48-diUb
分子名称: Proteasomal ubiquitin receptor ADRM1, Ubiquitin
著者Liu, Z, Dong, X, Gong, Z, Yi, H.W, Liu, K, Yang, J, Zhang, W.P, Tang, C.
登録日2017-10-22
公開日2019-03-13
最終更新日2019-04-24
実験手法SOLUTION NMR
主引用文献Structural basis for the recognition of K48-linked Ub chain by proteasomal receptor Rpn13.
Cell Discov, 5, 2019
1C3T
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BU of 1c3t by Molmil
ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY
分子名称: PROTEIN (1D8 UBIQUITIN)
著者Lazar, G.A, Johnson, E.C, Desjarlais, J.R, Handel, T.M.
登録日1999-07-28
公開日1999-08-20
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Rotamer strain as a determinant of protein structural specificity.
Protein Sci., 8, 1999

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