PDB: 46169 resultsInfo pagesStatus searchChemie searchBIRD

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3OA6	Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide Descriptor: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), H4 peptide monomethylated at lysine 20, ... Authors: Kim, D, Huang, P, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2010-08-04 Release date: 2010-08-18 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain. Nat.Struct.Mol.Biol., 17, 2010
6LBW	Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex Descriptor: DNA (5'-D(*CP*GP*(CBR)P*GP*AP*(LCC)P*TP*CP*GP*CP*G)-3'), SILVER ION Authors: Aoyama, H, Obika, S, Nakagawa, O. Deposit date: 2019-11-15 Release date: 2020-11-18 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.501 Å) Cite: Crystallographic Structure of Novel Types of Ag I -Mediated Base Pairs in Non-canonical DNA Duplex Containing 2'-O,4'-C-Methylene Bridged Nucleic Acids. Chemistry, 27, 2021
4ZBY	Family 4 uracil-DNA glycosylase from Sulfolobus tokodaii (uracil complex form) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, IRON/SULFUR CLUSTER, URACIL, ... Authors: Kawai, A, Miyamoto, S. Deposit date: 2015-04-15 Release date: 2015-09-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding Febs Lett., 589, 2015
4ZBX	Family 4 uracil-DNA glycosylase from Sulfolobus tokodaii (free form, X-ray wavelength=0.9000) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, IRON/SULFUR CLUSTER, Uracil-DNA glycosylase Authors: Kawai, A, Miyamoto, S. Deposit date: 2015-04-15 Release date: 2015-09-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding Febs Lett., 589, 2015
6M0C	Solution NMR Structures of DNA minidumbbell formed by 5'-CTTG CATG-3'. Descriptor: DNA (5'-D(*CP*TP*TP*GP*CP*AP*TP*G)-3'), SODIUM ION Authors: Ngai, C.K, Guo, P. Deposit date: 2020-02-21 Release date: 2020-06-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: High-Resolution Structures of DNA Minidumbbells Comprising Type II Tetraloops with a Purine Minor Groove Residue. J.Phys.Chem.B, 124, 2020
6M0B	Solution NMR structures of DNA minidumbbell formed by 5'-CTTG CGTG-3'. Descriptor: DNA (5'-D(*CP*TP*TP*GP*CP*GP*TP*G)-3'), SODIUM ION Authors: Ngai, C.K, Guo, P. Deposit date: 2020-02-21 Release date: 2020-06-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: High-Resolution Structures of DNA Minidumbbells Comprising Type II Tetraloops with a Purine Minor Groove Residue. J.Phys.Chem.B, 124, 2020
2BPC	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM Descriptor: DNA POLYMERASE BETA, MANGANESE (II) ION Authors: Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J. Deposit date: 1994-07-08 Release date: 1994-08-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science, 264, 1994
2HQA	Crystal structure of the catalytic alpha subunit of E. Coli replicative DNA polymerase III Descriptor: DNA polymerase III alpha subunit, PHOSPHATE ION Authors: Lamers, M.H, Georgescu, R.E, Lee, S.G, O'Donnell, M, Kuriyan, J. Deposit date: 2006-07-18 Release date: 2006-09-19 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of the Catalytic alpha Subunit of E. coli Replicative DNA Polymerase III. Cell(Cambridge,Mass.), 126, 2006
8C63	Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 4 h of soaking Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, PLATINUM (II) ION, ... Authors: Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A. Deposit date: 2023-01-11 Release date: 2024-01-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.52 Å) Cite: On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer. Dalton Trans, 53, 2024
8C64	Crystal structure of arsenoplatin-1/B-DNA adduct obtained upon 48 h of soaking Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION, arsenoplatin-1 Authors: Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A. Deposit date: 2023-01-11 Release date: 2024-01-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.51 Å) Cite: On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer. Dalton Trans, 53, 2024
8C62	Crystal structure of cisplatin/B-DNA adduct Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM (II) ION Authors: Troisi, R, Tito, G, Ferraro, G, Sica, F, Merlino, A. Deposit date: 2023-01-11 Release date: 2024-01-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.31 Å) Cite: On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer. Dalton Trans, 53, 2024
2HNH	Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III Descriptor: DNA polymerase III alpha subunit, PHOSPHATE ION Authors: Meindert, M.H, Georgescu, R.E, Lee, S, O'Donnell, M, Kuriyan, J. Deposit date: 2006-07-12 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structure of the Catalytic alpha Subunit of E. coli Replicative DNA Polymerase III. Cell(Cambridge,Mass.), 126, 2006
4ZBZ	Family 4 uracil-DNA glycosylase from Sulfolobus tokodaii (free form, X-ray wavelength=1.5418) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, IRON/SULFUR CLUSTER, ... Authors: Kawai, A, Miyamoto, S. Deposit date: 2015-04-15 Release date: 2015-09-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding Febs Lett., 589, 2015
6NIZ	Atomic structure of a fluorescent Ag8 cluster templated by a multistranded DNA scaffold Descriptor: DNA (5'-D(*AP*AP*CP*CP*CP*CP)-3'), SILVER ION Authors: Lieberman, R.L, Huard, D.J.E. Deposit date: 2019-01-02 Release date: 2019-01-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (0.93 Å) Cite: Atomic Structure of a Fluorescent Ag8Cluster Templated by a Multistranded DNA Scaffold. J.Am.Chem.Soc., 141, 2019
5DNY	Structure of the ATPrS-Mre11/Rad50-DNA complex Descriptor: DNA (27-MER), DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase, DNA double-strand break repair protein Mre11, ... Authors: Liu, Y. Deposit date: 2015-09-10 Release date: 2016-02-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.11 Å) Cite: ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex. Embo J., 35, 2016
7XUZ	Crystal structure of a HDAC4-MEF2A-DNA ternary complex Descriptor: DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3'), DNA (5'-D(P*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*A)-3'), Histone deacetylase 4, ... Authors: Dai, S.Y, Guo, L, Dey, R, Guo, M, Bates, D, Cayford, J, Chen, X.J, Wei, X.D, Chen, L, Chen, Y.H. Deposit date: 2022-05-20 Release date: 2023-11-29 Last modified: 2024-06-12 Method: X-RAY DIFFRACTION (3.591 Å) Cite: Structural insights into the HDAC4-MEF2A-DNA complex and its implication in long-range transcriptional regulation. Nucleic Acids Res., 52, 2024
8D9J	SAMHD1-DNA complex Descriptor: CALCIUM ION, DNA (5'-D(*CP*AP*AP*TP*G)-3'), Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ... Authors: Hollis, T.J, Batalis, S.M. Deposit date: 2022-06-10 Release date: 2023-07-05 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Protein oxidation increases SAMHD1 binding ssDNA via its regulatory site. Nucleic Acids Res., 51, 2023
6TNF	Structure of monoubiquitinated FANCD2 in complex with FANCI and DNA Descriptor: DNA (33-MER), FANCD2, Fanconi anemia complementation group I, ... Authors: Alcon, P, Shakeel, S, Passmore, L.A. Deposit date: 2019-12-07 Release date: 2020-02-19 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: FANCD2-FANCI is a clamp stabilized on DNA by monoubiquitination of FANCD2 during DNA repair. Nat.Struct.Mol.Biol., 27, 2020
2ZBK	Crystal structure of an intact type II DNA topoisomerase: insights into DNA transfer mechanisms Descriptor: RADICICOL, Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A Authors: Graille, M, Cladiere, L, Durand, D, Lecointe, F, Forterre, P, van Tilbeurgh, H, Paris-Sud Yeast Structural Genomics (YSG) Deposit date: 2007-10-22 Release date: 2008-02-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.56 Å) Cite: Crystal Structure of an Intact Type II DNA Topoisomerase: Insights into DNA Transfer Mechanisms Structure, 16, 2008
1MHT	COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE Descriptor: DNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE), ... Authors: Cheng, X. Deposit date: 1994-12-08 Release date: 1995-06-03 Last modified: 2018-04-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: HhaI methyltransferase flips its target base out of the DNA helix. Cell(Cambridge,Mass.), 76, 1994
5XS0	Structure of a ssDNA bound to the outer DNA binding site of RAD52 Descriptor: DNA repair protein RAD52 homolog, ssDNA (5'-D(*CP*CP*CP*CP*CP*C)-3'), ssDNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3'), ... Authors: Saotome, M, Saito, K, Yasuda, T, Sugiyama, S, Kurumizaka, H, Kagawa, W. Deposit date: 2017-06-11 Release date: 2018-04-25 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Basis of Homology-Directed DNA Repair Mediated by RAD52 iScience, 3, 2018
1LJM	DNA recognition is mediated by conformational transition and by DNA bending Descriptor: CHLORIDE ION, RUNX1 transcription factor Authors: Bartfeld, D, Shimon, L, Couture, G.C, Rabinovich, D, Frolow, F, Levanon, D, Groner, Y, Shakked, Z. Deposit date: 2002-04-22 Release date: 2002-11-06 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: DNA Recognition by the RUNX1 Transcription Factor Is Mediated by an Allosteric Transition in the RUNT Domain and by DNA Bending. Structure, 10
7YGP	DNA duplex containing 5OHU-T base pairs Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*AP*CP*CP*TP*(OHU)P*GP*GP*TP*CP*C)-3') Authors: Kondo, J, Torigoe, H, Arakawa, F. Deposit date: 2022-07-12 Release date: 2023-05-24 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.997 Å) Cite: Specific binding of Hg 2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA. J.Inorg.Biochem., 241, 2023
5DNB	STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION Authors: Prive, G.G, Yanagi, K, Dickerson, R.E. Deposit date: 1990-03-22 Release date: 1991-10-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. J.Mol.Biol., 217, 1991
5DWA	Crystal structure of pre-specific restriction endonuclease AgeI-DNA complex Descriptor: DNA (5'-D(*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*G*)-3'), Type-2 restriction enzyme AgeI Authors: Tamulaitiene, G, Jovaisaite, V, Grazulis, S, Siksnys, V. Deposit date: 2015-09-22 Release date: 2016-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA. Nucleic Acids Res., 45, 2017

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