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8I0U
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BU of 8i0u by Molmil
The cryo-EM structure of human Bact-IV complex
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, Crooked neck-like protein 1, ...
Authors:Zhan, X, Lu, Y, Shi, Y.
Deposit date:2023-01-11
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular basis for the activation of human spliceosome.
Nat Commun, 15, 2024
5EDW
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BU of 5edw by Molmil
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
Descriptor: CALCIUM ION, DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2015-10-22
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion
To Be Published
6Y8X
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BU of 6y8x by Molmil
Structure of Atlantic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
Descriptor: CALCIUM ION, Phosphoglucomutase 5, SODIUM ION
Authors:Gustafsson, R, Eckhard, U, Selmer, M.
Deposit date:2020-03-06
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Biomolecules, 10, 2020
5EGY
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BU of 5egy by Molmil
Structure of ligand free human DPP3 in closed form.
Descriptor: Dipeptidyl peptidase 3, MAGNESIUM ION, ZINC ION
Authors:Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
Deposit date:2015-10-27
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.741 Å)
Cite:Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5EHH
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BU of 5ehh by Molmil
Structure of human DPP3 in complex with endomorphin-2.
Descriptor: Dipeptidyl peptidase 3, Endomorphin-2, MAGNESIUM ION, ...
Authors:Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
Deposit date:2015-10-28
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
8I5X
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BU of 8i5x by Molmil
Structure of human Nav1.7 in complex with Vinpocetine
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Wu, Q.R, Yan, N.
Deposit date:2023-01-26
Release date:2023-06-14
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
8I5B
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BU of 8i5b by Molmil
Structure of human Nav1.7 in complex with bupivacaine
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wu, Q.R, Yan, N.
Deposit date:2023-01-24
Release date:2023-06-14
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
6Y8Z
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BU of 6y8z by Molmil
Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Gustafsson, R, Eckhard, U, Selmer, M.
Deposit date:2020-03-06
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Biomolecules, 10, 2020
6WOV
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BU of 6wov by Molmil
Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 wild type in complex with FKBP12.6
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
Authors:Iyer, K.A, Hu, Y, Nayak, A.R, Kurebayashi, N, Murayama, T, Samso, M.
Deposit date:2020-04-25
Release date:2020-08-05
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Structural mechanism of two gain-of-function cardiac and skeletal RyR mutations at an equivalent site by cryo-EM.
Sci Adv, 6, 2020
8K3J
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BU of 8k3j by Molmil
Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Contactin-2, ...
Authors:Zhang, Z.Z.
Deposit date:2023-07-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of human CNTN2 immunoglobulin domains 1-6 homo-dimer
To Be Published
6Y8Y
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BU of 6y8y by Molmil
Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with bound Glucose-1-Phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, ACETATE ION, CALCIUM ION, ...
Authors:Gustafsson, R, Eckhard, U, Selmer, M.
Deposit date:2020-03-06
Release date:2020-12-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Biomolecules, 10, 2020
5E3C
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BU of 5e3c by Molmil
Structure of human DPP3 in complex with hemorphin like opioid peptide IVYPW
Descriptor: Dipeptidyl peptidase 3, IVYPW, MAGNESIUM ION, ...
Authors:Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
Deposit date:2015-10-02
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.765 Å)
Cite:Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
7YFW
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BU of 7yfw by Molmil
Cyanophage Pam3 fiber
Descriptor: Pam3 fiber proreins
Authors:Yang, F, Jiang, Y.L, Zhou, C.Z.
Deposit date:2022-07-09
Release date:2023-01-18
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Fine structure and assembly pattern of a minimal myophage Pam3.
Proc.Natl.Acad.Sci.USA, 120, 2023
7YFZ
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BU of 7yfz by Molmil
Cyanophage Pam3 baseplate proteins
Descriptor: Pam3 baseplate wedge gp22, Pam3 baseplate wedge gp23, Pam3 hub gp19, ...
Authors:Yang, F, Jiang, Y.L, Zhou, C.Z.
Deposit date:2022-07-09
Release date:2023-01-18
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Fine structure and assembly pattern of a minimal myophage Pam3.
Proc.Natl.Acad.Sci.USA, 120, 2023
4NTX
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BU of 4ntx by Molmil
Structure of acid-sensing ion channel in complex with snake toxin and amiloride
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,5-DIAMINO-N-(AMINOIMINOMETHYL)-6-CHLOROPYRAZINECARBOXAMIDE, Acid-sensing ion channel 1, ...
Authors:Baconguis, I, Bohlen, C.J, Goehring, A, Julius, D, Gouaux, E.
Deposit date:2013-12-02
Release date:2014-02-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:X-ray structure of Acid-sensing ion channel 1-snake toxin complex reveals open state of a na(+)-selective channel.
Cell(Cambridge,Mass.), 156, 2014
8J4F
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BU of 8j4f by Molmil
Structure of human Nav1.7 in complex with Hardwickii acid
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, (4~{a}~{R},5~{S},6~{R},8~{a}~{R})-5-[2-(furan-3-yl)ethyl]-5,6,8~{a}-trimethyl-3,4,4~{a},6,7,8-hexahydronaphthalene-1-carboxylic acid, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Wu, Q.R, Yan, N.
Deposit date:2023-04-19
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
7W5A
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BU of 7w5a by Molmil
The cryo-EM structure of human pre-C*-II complex
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ...
Authors:Zhan, X, Lu, Y, Shi, Y.
Deposit date:2021-11-29
Release date:2022-06-22
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanism of exon ligation by human spliceosome.
Mol.Cell, 82, 2022
7W5B
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BU of 7w5b by Molmil
The cryo-EM structure of human C* complex
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ...
Authors:Zhan, X, Lu, Y, Shi, Y.
Deposit date:2021-11-29
Release date:2022-06-22
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mechanism of exon ligation by human spliceosome.
Mol.Cell, 82, 2022
7WVY
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BU of 7wvy by Molmil
Cryo-EM structure of the human formyl peptide receptor 2 in complex with Abeta42 and Gi2
Descriptor: Amyloid-beta A4 protein, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhu, Y, Lin, X, Zong, X, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-02-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of FPR2 in recognition of A beta 42 and neuroprotection by humanin.
Nat Commun, 13, 2022
7WVW
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BU of 7wvw by Molmil
Cryo-EM structure of the human formyl peptide receptor 2 in complex with fMYFINILTL and Gi2
Descriptor: FME-TYR-PHE-ILE-ASN-ILE-LEU-THE-LEU, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhu, Y, Lin, X, Zong, X, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-02-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of FPR2 in recognition of A beta 42 and neuroprotection by humanin.
Nat Commun, 13, 2022
7WVX
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BU of 7wvx by Molmil
Cryo-EM structure of the human formyl peptide receptor 2 in complex with fhumanin and Gi2
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-2, ...
Authors:Zhu, Y, Lin, X, Zong, X, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-02-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of FPR2 in recognition of A beta 42 and neuroprotection by humanin.
Nat Commun, 13, 2022
4YN0
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BU of 4yn0 by Molmil
Crystal structure of APP E2 domain in complex with DR6 CRD domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Amyloid beta A4 protein, MAGNESIUM ION, ...
Authors:Xu, K, Nikolov, D.
Deposit date:2015-03-08
Release date:2015-04-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of DR6 in complex with the amyloid precursor protein provides insight into death receptor activation.
Genes Dev., 29, 2015
7WVV
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BU of 7wvv by Molmil
Cryo-EM structure of the human formyl peptide receptor 2 in complex with fMLFII and Gi2
Descriptor: FME-LEU-PHE-ILE-ILE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhu, Y, Lin, X, Zong, X, Han, S, Zhao, Q, Wu, B.
Deposit date:2022-02-11
Release date:2022-04-13
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of FPR2 in recognition of A beta 42 and neuroprotection by humanin.
Nat Commun, 13, 2022
7WV9
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BU of 7wv9 by Molmil
Allosteric modulator ZCZ011 binding to CP55940-bound cannabinoid receptor 1 in complex with Gi protein
Descriptor: 2-[(1R,2R,5R)-5-hydroxy-2-(3-hydroxypropyl)cyclohexyl]-5-(2-methyloctan-2-yl)phenol, 6-methyl-3-[(1S)-2-nitro-1-thiophen-2-yl-ethyl]-2-phenyl-1H-indole, Cannabinoid receptor 1, ...
Authors:Xu, Z, Shao, Z.
Deposit date:2022-02-10
Release date:2022-06-15
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Molecular mechanism of allosteric modulation for the cannabinoid receptor CB1.
Nat.Chem.Biol., 18, 2022
4ZYF
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BU of 4zyf by Molmil
Discovery of NVP-CGM097 - a highly potent and selective MDM2 inhibitor undergoing phase 1 clinical trials in p53wt tumors: Hdm2 (MDM2) complexed with NVP-CGM097
Descriptor: (S)-1-(4-chlorophenyl)-7-isopropoxy-6-methoxy-2-(4-(methyl(((1r,4S)-4-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl)methyl)amino)phenyl)-1,2-dihydroisoquinolin-3(4H)-one, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2
Authors:Kallen, J.
Deposit date:2015-05-21
Release date:2015-07-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of a Dihydroisoquinolinone Derivative (NVP-CGM097): A Highly Potent and Selective MDM2 Inhibitor Undergoing Phase 1 Clinical Trials in p53wt Tumors.
J.Med.Chem., 58, 2015

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PDB entries from 2024-10-16

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