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8XCP
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BU of 8xcp by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XVA
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BU of 8xva by Molmil
Human TOM complex with whole Tom20
Descriptor: Mitochondrial import receptor subunit TOM20 homolog, Mitochondrial import receptor subunit TOM22 homolog, Mitochondrial import receptor subunit TOM40 homolog, ...
Authors:Tian, X.Y, Su, J.Y, Sui, S.F.
Deposit date:2024-01-14
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (5.92 Å)
Cite:Structure of the intact Tom20 receptor in the human translocase of the outer membrane complex.
Pnas Nexus, 3, 2024
9ATE
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BU of 9ate by Molmil
Crystal structure of MERS 3CL protease in complex with a methylbicyclo[2.2.1]heptane 2-pyrrolidone inhibitor
Descriptor: (1R,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5
Authors:Liu, L, Lovell, S, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
Deposit date:2024-02-26
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
8VC1
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BU of 8vc1 by Molmil
CryoEM structure of insect gustatory receptor BmGr9
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, ...
Authors:Frank, H.M, Walsh Jr, R.M, Garrity, P.A, Gaudet, R.
Deposit date:2023-12-13
Release date:2024-01-10
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structure of an insect gustatory receptor.
Biorxiv, 2023
9ART
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BU of 9art by Molmil
Crystal structure of SARS-CoV-2 main protease A191T mutant in complex with an inhibitor 5h
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-({(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Bulut, H, Hattori, S, Hayashi, H, Hasegawa, K, Li, M, Wlodawer, A, Tamamura, H, Mitsuya, H.
Deposit date:2024-02-23
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural and virologic mechanism of emergence of main protease inhibitor-resistance in SARS-CoV-2 as selected with main protease inhibitors
To Be Published
8W1C
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BU of 8w1c by Molmil
Cryo-EM structure of BTV pre-subcore
Descriptor: Core protein VP3, VP6
Authors:Xia, X, Sung, P.Y, Martynowycz, M.W, Gonen, T, Roy, P, Zhou, Z.H.
Deposit date:2024-02-15
Release date:2024-04-24
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:RNA genome packaging and capsid assembly of bluetongue virus visualized in host cells.
Cell, 187, 2024
8W0O
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BU of 8w0o by Molmil
GDH-105 crystal structure
Descriptor: CHLORIDE ION, Dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Peat, T.S, Newman, J.
Deposit date:2024-02-13
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Enhancing the Imine Reductase Activity of a Promiscuous Glucose Dehydrogenase for Scalable Manufacturing of a Chiral Neprilysin Inhibitor Precursor
Acs Catalysis, 14, 2024
9FXN
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BU of 9fxn by Molmil
Human mitochondrial nuclease EXOG (hEXOG)
Descriptor: MAGNESIUM ION, Nuclease EXOG, mitochondrial
Authors:Karasinska, J.M, Szymanski, M.R.
Deposit date:2024-07-02
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Human mitochondrial nuclease EXOG (hEXOG)
Nat Commun, 8, 2017
8XCY
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BU of 8xcy by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8W2C
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BU of 8w2c by Molmil
Thioesterase domain structure from Sulfazecin biosynthetic nonribosomal peptide synthetase SulM
Descriptor: 1,2-ETHANEDIOL, Non-ribosomal peptide synthetase, SODIUM ION
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2024-02-20
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of the monobactam-producing thioesterase domain of SulM forms a unique complex with the upstream carrier protein domain.
To Be Published
9BKF
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BU of 9bkf by Molmil
Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
Descriptor: Serine protease 1
Authors:Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
Deposit date:2024-04-27
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
To Be Published
8XOK
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BU of 8xok by Molmil
Cryo-EM structure of human ABCC4
Descriptor: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, ATP-binding cassette sub-family C member 4, PALMITIC ACID
Authors:Zhang, P.F, Liu, Z.
Deposit date:2024-01-01
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport.
Febs Lett., 2024
8XD3
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BU of 8xd3 by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8VLB
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BU of 8vlb by Molmil
Crystal structure of EloBC-VHL-CDO1 complex bound to compound 4 molecular glue
Descriptor: CITRIC ACID, Cysteine dioxygenase type 1, Elongin-B, ...
Authors:Shu, W, Ma, X, Tutter, A, Buckley, D, Golosov, A, Michaud, G.
Deposit date:2024-01-11
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A small molecule VHL molecular glue degrader for cysteine dioxygenase 1
To Be Published
9BD3
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BU of 9bd3 by Molmil
Structure of the MAGEA4 MHD-RAD18 R6BD Complex
Descriptor: E3 ubiquitin-protein ligase RAD18, Melanoma antigen A 4
Authors:Forker, K, Zhou, P.
Deposit date:2024-04-10
Release date:2024-06-05
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of MAGEA4 MHD-RAD18 R6BD reveals a flipped binding mode compared to AlphaFold2 prediction.
Embo J., 43, 2024
8X39
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BU of 8x39 by Molmil
Crystal structure of cellulosomal double-dockerin module of Clo1313_0689 from Clostridium thermocellum
Descriptor: CALCIUM ION, Serine protease
Authors:Chen, C, Dong, S, Feng, Y.
Deposit date:2023-11-12
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A cellulosomal double-dockerin module from Clostridium thermocellum shows distinct structural and cohesin-binding features.
Protein Sci., 33, 2024
4W86
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BU of 4w86 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with glucose and TRIS
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, ...
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
8WTY
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BU of 8wty by Molmil
Cryo-EM structure of noradrenaline transporter in complex with ziprasidone
Descriptor: 5-[2-[4-(1,2-benzothiazol-3-yl)piperazin-1-yl]ethyl]-6-chloranyl-1,3-dihydroindol-2-one, Sodium-dependent noradrenaline transporter
Authors:Zhao, Y, Hu, T, Yu, Z.
Deposit date:2023-10-19
Release date:2024-08-07
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Transport and inhibition mechanisms of the human noradrenaline transporter.
Nature, 2024
8Z8R
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BU of 8z8r by Molmil
norbelladine 4'-O-methyltransferase S52T complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2024-04-22
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8WIX
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BU of 8wix by Molmil
cryo-EM structure of alligator haemoglobin in carbonmonoxy form
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
Deposit date:2023-09-25
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.29 Å)
Cite:The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WQH
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BU of 8wqh by Molmil
cryo-EM structure of neddylated CUL2-RBX1-ELOB-ELOC-FEM1B bound with the C-degron of CCDC89 (conformation 2)
Descriptor: Coiled-coil domain-containing protein 89, Cullin-2, E3 ubiquitin-protein ligase RBX1, ...
Authors:Chen, X, Zhang, K, Xu, C.
Deposit date:2023-10-11
Release date:2024-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Mechanism of Psi-Pro/C-degron recognition by the CRL2 FEM1B ubiquitin ligase.
Nat Commun, 15, 2024
9EMB
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BU of 9emb by Molmil
Structure of KefC Asp156Asn variant
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE MONOPHOSPHATE, Glutathione-regulated potassium-efflux system protein KefC
Authors:Gulati, A, Kokane, S, Drew, D.
Deposit date:2024-03-07
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structure of KefC Asp156Asn variant
To Be Published
9FW2
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BU of 9fw2 by Molmil
SARS CoV-2 nsp10 in complex with the ExoN domain from nsp14
Descriptor: GLYCEROL, Guanine-N7 methyltransferase nsp14, Non-structural protein 11, ...
Authors:Fisher, S.Z.
Deposit date:2024-06-28
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:SARS CoV-2 nsp10 in complex with the ExoN domain from nsp14
To Be Published
8XCT
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BU of 8xct by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction
Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XOM
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BU of 8xom by Molmil
Cryo-EM structure of human ABCC4 in complex with ANP-bound in NBD1 and METHOTREXATE
Descriptor: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, ATP-binding cassette sub-family C member 4, MAGNESIUM ION, ...
Authors:Zhang, P.F, Liu, Z.
Deposit date:2024-01-01
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport.
Febs Lett., 2024

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PDB entries from 2024-08-21

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