PDB: 223532 resultsInfo pagesStatus searchChemie searchBIRD

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3K3R	Unrefined crystal structure of a LexA-DNA complex Descriptor: DNA (28-MER), LexA repressor Authors: Zhang, A.P.P, Pigli, Y.Z, Rice, P.A. Deposit date: 2009-10-04 Release date: 2010-08-18 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of the LexA-DNA complex and implications for SOS box measurement. Nature, 466, 2010
5J0Y	Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J2E	Ternary complex crystal structure of DNA polymerase Beta with C:T mismatch at the primer terminus Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA polymerase beta, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-29 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3K52	Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IP Descriptor: Isopentenyl phosphate, SULFATE ION, isopentenyl phosphate kinase Authors: Dellas, N, Noel, J.P. Deposit date: 2009-10-06 Release date: 2010-05-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates. Acs Chem.Biol., 5, 2010
5J29	Ternary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase beta, Downstream Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-29 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3K5R	Crystal Structure of mouse T-cadherin EC1 EC2 Descriptor: Cadherin 13 Authors: Shapiro, L, Ciatto, C. Deposit date: 2009-10-07 Release date: 2010-03-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: T-cadherin structures reveal a novel adhesive binding mechanism Nat.Struct.Mol.Biol., 17, 2010
5J2G	Ternary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA polymerase beta, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-29 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3K6D	Crystal structure of Xenopus laevis T-cadherin EC1 Descriptor: T-cadherin, ZINC ION Authors: Shapiro, L, Ciatto, C. Deposit date: 2009-10-08 Release date: 2010-03-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: T-cadherin structures reveal a novel adhesive binding mechanism Nat.Struct.Mol.Biol., 17, 2010
4W6Z	YEAST ALCOHOL DEHYDROGENASE I, SACCHAROMYCES CEREVISIAE FERMENTATIVE ENZYME Descriptor: Alcohol dehydrogenase 1, NICOTINAMIDE-8-IODO-ADENINE-DINUCLEOTIDE, TRIFLUOROETHANOL, ... Authors: plapp, B.v, savarimuthu, b.r, ramaswamy, s. Deposit date: 2014-08-21 Release date: 2014-09-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Yeast alcohol dehydrogenase structure and catalysis. Biochemistry, 53, 2014
4W7O	CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) FROM AURICULARIA AURICULA-JUDAE. G169L, Y147S AND W377S TRIPLE MUTANT Descriptor: Dye-decolorizing peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Medrano, F.J, Romero, A. Deposit date: 2014-08-22 Release date: 2015-03-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study. Biochem.J., 466, 2015
3JRB	Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center Descriptor: DNA (27-MER), DNA-binding protein fis Authors: Stella, S, Cascio, D, Johnson, R.C. Deposit date: 2009-09-08 Release date: 2010-04-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
3JRH	Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21 Descriptor: DNA (27-MER), DNA-binding protein fis Authors: Stella, S, Cascio, D, Johnson, R.C. Deposit date: 2009-09-08 Release date: 2010-04-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.88 Å) Cite: The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
3JRS	Crystal structure of (+)-ABA-bound PYL1 Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790 Authors: Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M. Deposit date: 2009-09-08 Release date: 2009-11-03 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural basis of abscisic acid signalling Nature, 462, 2009
3K8C	Complex of Trypanosoma cruzi ribose 5-phosphate isomerase type B with 4-deoxy-4-phospho-D-erythronohydroxamic acid Descriptor: 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID, Ribose 5-phosphate isomerase Authors: Naworyta, A, Mowbray, S.L, Stern, A.L. Deposit date: 2009-10-14 Release date: 2010-10-27 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of type B ribose 5-phosphate isomerase from Trypanosoma cruzi shed light on the determinants of sugar specificity in the structural family. Febs J., 278, 2011
1Q9D	Fructose-1,6-bisphosphatase Complexed with a New Allosteric Site Inhibitor (I-State) Descriptor: 3-(4-HYDROXYBENZYL)-2-[1-({[2-(4-HYDROXYPHENYL)ETHYL]AMINO}CARBONYL)BUTYL]-4-OXO-3,6,11,11A-TETRAHYDRO-4H-PYRAZINO[1,2-B]ISOQUINOLIN-2-IUM-1-OLATE, 6-O-phosphono-beta-D-fructofuranose, Fructose-1,6-bisphosphatase, ... Authors: Honzatko, R.B, Choe, J.Y. Deposit date: 2003-08-25 Release date: 2003-12-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Inhibition of fructose-1,6-bisphosphatase by a new class of allosteric effectors J.Biol.Chem., 278, 2003
3K9K	Transposase domain of Metnase Descriptor: Histone-lysine N-methyltransferase SETMAR Authors: Goodwin, K.D, He, H, Imasaki, T, Lee, S.-H, Georgiadis, M.M. Deposit date: 2009-10-15 Release date: 2010-07-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase. Biochemistry, 49, 2010
3JSS	Crystal structure of a mutant RelB dimerization domain Descriptor: Transcription factor RelB Authors: Vu, D, Huang, D.B, Ghosh, G. Deposit date: 2009-09-10 Release date: 2010-11-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A structural basis for selective dimerization by NF-kappa B RelB. J.Mol.Biol., 425, 2013
3K9T	Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, IMIDAZOLE, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-10-16 Release date: 2009-11-10 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution To be published
5J0B	Structure of the immune receptor CD33 in complex with 6'-sialyllactose Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Myeloid cell surface antigen CD33, ... Authors: Dodd, R.B. Deposit date: 2016-03-28 Release date: 2017-04-05 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.48 Å) Cite: STRUCTURE OF LIGAND BOUND CD33 RECEPTOR ASSOCIATED WITH ALZHEIMER'S DISEASE To Be Published
5J0U	Binary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3JWH	Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-C Descriptor: Hen1, S-ADENOSYL-L-HOMOCYSTEINE Authors: Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S. Deposit date: 2009-09-18 Release date: 2009-10-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1. Proc.Natl.Acad.Sci.USA, 106, 2009
5J0Q	Binary complex crystal structure of DNA polymerase Beta with A:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0T	Binary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3JYO	Quinate dehydrogenase from Corynebacterium glutamicum in complex with NAD Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Quinate/shikimate dehydrogenase Authors: Hoeppner, A, Niefind, K, Schomburg, D. Deposit date: 2009-09-22 Release date: 2010-10-27 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1 Å) Cite: Enzyme-substrate complexes of the quinate/shikimate dehydrogenase from Corynebacterium glutamicum enable new insights in substrate and cofactor binding, specificity, and discrimination. Biol.Chem., 394, 2013
5J2I	Ternary complex crystal structure of DNA polymerase Beta with T:C mismatch at the primer terminus Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase beta, Downstream Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-29 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016

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