Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5K5S
DownloadVisualize
BU of 5k5s by Molmil
Crystal structure of the active form of human calcium-sensing receptor extracellular domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular calcium-sensing receptor, ...
Authors:Geng, Y, Mosyak, L, Kurinov, I, Zuo, H, Sturchler, E, Cheng, T.C, Subramanyam, P, Brown, A.P, Brennan, S.C, Mun, H.-C, Bush, M, Chen, Y, Nguyen, T, Cao, B, Chang, D, Quick, M, Conigrave, A, Colecraft, H.M, McDonald, P, Fan, Q.R.
Deposit date:2016-05-23
Release date:2016-08-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural mechanism of ligand activation in human calcium-sensing receptor.
Elife, 5, 2016
6CG6
DownloadVisualize
BU of 6cg6 by Molmil
mouse cadherin-10 EC1-2 adhesive fragment
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cadherin-10, ...
Authors:Brasch, J, Harrison, O.J, Shapiro, L.
Deposit date:2018-02-19
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.707 Å)
Cite:Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.
Cell Rep, 23, 2018
6CGA
DownloadVisualize
BU of 6cga by Molmil
Structure of the PR-DUB complex
Descriptor: Polycomb protein Asx, Ubiquitin carboxyl-terminal hydrolase calypso
Authors:Foglizzo, M, Middleton, A.J, Day, C.L, Mace, P.D.
Deposit date:2018-02-19
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:A bidentate Polycomb Repressive-Deubiquitinase complex is required for efficient activity on nucleosomes.
Nat Commun, 9, 2018
6VZ1
DownloadVisualize
BU of 6vz1 by Molmil
Cryo-EM structure of human diacylglycerol O-acyltransferase 1 complexed with acyl-CoA substrate
Descriptor: Diacylglycerol O-acyltransferase 1, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name), [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Sui, X, Wang, K, Gluchowski, N, Liao, M, Walther, C.T, Farese Jr, V.R.
Deposit date:2020-02-27
Release date:2020-05-13
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme.
Nature, 581, 2020
6NQ6
DownloadVisualize
BU of 6nq6 by Molmil
Structure & function of a new Aspartylglucosaminuria variant
Descriptor: N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
Authors:Pande, S, Guo, H.C.
Deposit date:2019-01-19
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The T99K variant of glycosylasparaginase shows a new structural mechanism of the genetic disease aspartylglucosaminuria.
Protein Sci., 28, 2019
6CGN
DownloadVisualize
BU of 6cgn by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound (pH 7)
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, PHOSPHATE ION, ...
Authors:Maggiolo, A.O, Boal, A.K.
Deposit date:2018-02-20
Release date:2018-05-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:An endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5N2T
DownloadVisualize
BU of 5n2t by Molmil
Thermolysin in complex with inhibitor JC287
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, Thermolysin, ...
Authors:Cramer, J, Krimmer, S.G, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2017-06-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:Paying the Price of Desolvation in Solvent-Exposed Protein Pockets: Impact of Distal Solubilizing Groups on Affinity and Binding Thermodynamics in a Series of Thermolysin Inhibitors.
J. Med. Chem., 60, 2017
5N34
DownloadVisualize
BU of 5n34 by Molmil
Thermolysin in complex with inhibitor JC276
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Cramer, J, Krimmer, S.G, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2017-06-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Paying the Price of Desolvation in Solvent-Exposed Protein Pockets: Impact of Distal Solubilizing Groups on Affinity and Binding Thermodynamics in a Series of Thermolysin Inhibitors.
J. Med. Chem., 60, 2017
6CGU
DownloadVisualize
BU of 6cgu by Molmil
mouse cadherin-6 EC1-2 adhesive fragment
Descriptor: CALCIUM ION, Cadherin-6
Authors:Brasch, J, Harrison, O.J, Shapiro, L.
Deposit date:2018-02-20
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.
Cell Rep, 23, 2018
6SVE
DownloadVisualize
BU of 6sve by Molmil
Protein allostery of the WW domain at atomic resolution: pCdc25C bound structure
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Strotz, D, Orts, J, Friedmann, M, Guntert, P, Vogeli, B, Riek, R.
Deposit date:2019-09-18
Release date:2020-10-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Protein Allostery at Atomic Resolution.
Angew.Chem.Int.Ed.Engl., 59, 2020
5N6M
DownloadVisualize
BU of 5n6m by Molmil
Structure of the membrane integral lipoprotein N-acyltransferase Lnt from P. aeruginosa
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Apolipoprotein N-acyltransferase, CITRATE ANION, ...
Authors:Huang, C.-Y, Boland, C, Howe, N, Wiktor, M, Vogeley, L, Weichert, D, Bailey, J, Olieric, V, Wang, M, Caffrey, M.
Deposit date:2017-02-15
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural insights into the mechanism of the membrane integral N-acyltransferase step in bacterial lipoprotein synthesis.
Nat Commun, 8, 2017
5K5M
DownloadVisualize
BU of 5k5m by Molmil
Co-Crystal Structure of Dengue Virus Serotype 2 RNA Dependent RNA Polymerase with Compound 27
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-[5-(3-hydroxyprop-1-yn-1-yl)thiophen-2-yl]-2,4-dimethoxy-N-[(3-methoxyphenyl)sulfonyl]benzamide, RNA Dependent RNA Polymerase, ...
Authors:Arora, R, Benson, T.E.
Deposit date:2016-05-23
Release date:2016-08-24
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Potent Allosteric Dengue Virus NS5 Polymerase Inhibitors: Mechanism of Action and Resistance Profiling.
Plos Pathog., 12, 2016
6CU2
DownloadVisualize
BU of 6cu2 by Molmil
Structure of N-truncated R2-type pyocin tail fiber at 2.6 angstrom resolution
Descriptor: MAGNESIUM ION, NICKEL (II) ION, R2-type pyocin
Authors:Salazar, A.J, Sherekar, M, Saccettini, J.C.
Deposit date:2018-03-23
Release date:2019-02-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:R pyocin tail fiber structure reveals a receptor-binding domain with a lectin fold.
PLoS ONE, 14, 2019
1G35
DownloadVisualize
BU of 1g35 by Molmil
CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR, AHA024
Descriptor: 2-[4-(HYDROXY-METHOXY-METHYL)-BENZYL]-7-(4-HYDROXYMETHYL-BENZYL)-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-1LAMBDA6-[1,2,7]THIADIAZEPANE-4,5-DIOL, HIV-1 PROTEASE
Authors:Lindberg, J, Unge, T.
Deposit date:2000-10-23
Release date:2001-06-06
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis and comparative molecular field analysis (CoMFA) of symmetric and nonsymmetric cyclic sulfamide HIV-1 protease inhibitors.
J.Med.Chem., 44, 2001
5M6I
DownloadVisualize
BU of 5m6i by Molmil
Crystal structure of non-cardiotoxic Bence-Jones light chain dimer M8
Descriptor: SODIUM ION, light chain dimer
Authors:Oberti, L, Rognoni, P, Russo, R, Bacarizo, J, Bolognesi, M, Ricagno, S.
Deposit date:2016-10-25
Release date:2017-11-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Concurrent structural and biophysical traits link with immunoglobulin light chains amyloid propensity.
Sci Rep, 7, 2017
7CWO
DownloadVisualize
BU of 7cwo by Molmil
SARS-CoV-2 spike protein RBD and P17 fab complex
Descriptor: Spike glycoprotein, heavy chain of P17 Fab, light chain of P17 Fab
Authors:Wang, X, Wang, N.
Deposit date:2020-08-29
Release date:2020-12-16
Last modified:2021-01-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Rational development of a human antibody cocktail that deploys multiple functions to confer Pan-SARS-CoVs protection.
Cell Res., 31, 2021
7C2B
DownloadVisualize
BU of 7c2b by Molmil
Crystal structure of ferredoxin: thioredoxin reductase and thioredoxin f2 complex
Descriptor: Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic, Ferredoxin-thioredoxin reductase variable chain, ...
Authors:Kurisu, G, Juniar, L, Tanaka, H.
Deposit date:2020-05-07
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7949 Å)
Cite:Structural basis for thioredoxin isoform-based fine-tuning of ferredoxin-thioredoxin reductase activity.
Protein Sci., 29, 2020
5KGW
DownloadVisualize
BU of 5kgw by Molmil
HIV1 catalytic core domain in complex with inhibitor: (2~{S})-2-[3-(3,4-dihydro-2~{H}-chromen-6-yl)-1-methyl-indol-2-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid
Descriptor: (2S)-tert-butoxy[3-(3,4-dihydro-2H-1-benzopyran-6-yl)-1-methyl-1H-indol-2-yl]acetic acid, Integrase, SULFATE ION
Authors:Feng, L, Kobe, M, Kvaratskhelia, M.
Deposit date:2016-06-13
Release date:2016-10-19
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Indole-based allosteric inhibitors of HIV-1 integrase.
Bioorg.Med.Chem.Lett., 26, 2016
5K82
DownloadVisualize
BU of 5k82 by Molmil
Crystal Structure of a Primate APOBEC3G N-Terminal Domain
Descriptor: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G, ...
Authors:Xiao, X, Li, S.-X, Yang, H, Chen, X.S.
Deposit date:2016-05-27
Release date:2016-08-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.913 Å)
Cite:Crystal structures of APOBEC3G N-domain alone and its complex with DNA.
Nat Commun, 7, 2016
8BV0
DownloadVisualize
BU of 8bv0 by Molmil
Binary complex between the NB-ARC domain from the Tomato immune receptor NRC1 and the SPRY domain-containing effector SS15 from the potato cyst nematode
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NRC1, Truncated secreted SPRY domain-containing protein 15 (Fragment)
Authors:Contreras, M.P, Pai, H, Muniyandi, S, Toghani, A, Lawson, D.M, Tumtas, Y, Duggan, C, Yuen, E.L.H, Stevenson, C.E.M, Harant, A, Wu, C.H, Bozkurt, T.O, Kamoun, S, Derevnina, L.
Deposit date:2022-12-01
Release date:2022-12-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Resurrection of plant disease resistance proteins via helper NLR bioengineering.
Sci Adv, 9, 2023
6NGG
DownloadVisualize
BU of 6ngg by Molmil
Crystal structure of human CD160 V58M mutant
Descriptor: CD160 antigen
Authors:Liu, W, Bonanno, J, Almo, S.C.
Deposit date:2018-12-21
Release date:2019-07-03
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis of CD160:HVEM Recognition.
Structure, 27, 2019
6HU4
DownloadVisualize
BU of 6hu4 by Molmil
F97L Hepatitis B core protein capsid
Descriptor: Capsid protein
Authors:Bottcher, B, Nassal, M.
Deposit date:2018-10-05
Release date:2018-12-26
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Structure of Mutant Hepatitis B Core Protein Capsids with Premature Secretion Phenotype.
J. Mol. Biol., 430, 2018
5K8R
DownloadVisualize
BU of 5k8r by Molmil
Structure of human clustered protocadherin gamma B3 EC1-4
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Nicoludis, J.M, Vogt, B.E, Gaudet, R.
Deposit date:2016-05-30
Release date:2016-08-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4.
Elife, 5, 2016
1RQ2
DownloadVisualize
BU of 1rq2 by Molmil
MYCOBACTERIUM TUBERCULOSIS FTSZ IN COMPLEX WITH CITRATE
Descriptor: CITRIC ACID, Cell division protein ftsZ
Authors:Leung, A.K.W, White, E.L, Ross, L.J, Reynolds, R.C, DeVito, J.A, Borhani, D.W.
Deposit date:2003-12-04
Release date:2004-08-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of Mycobacterium tuberculosis FtsZ reveals unexpected, G protein-like conformational switches.
J.Mol.Biol., 342, 2004
6NCU
DownloadVisualize
BU of 6ncu by Molmil
Interleukin-37 residues 53-206- dimer
Descriptor: Interleukin-37
Authors:Eisenmesser, E.Z.
Deposit date:2018-12-12
Release date:2019-03-13
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Interleukin-37 monomer is the active form for reducing innate immunity.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon