Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NJ5
DownloadVisualize
BU of 1nj5 by Molmil
Crystal structure of Prolyl-tRNA Synthetase from Methanothermobacter thermautotrophicus bound to proline sulfamoyl adenylate
Descriptor: '5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE, MAGNESIUM ION, Proline-tRNA Synthetase, ...
Authors:Kamtekar, S, Kennedy, W.D, Wang, J, Stathopoulos, C, Soll, D, Steitz, T.A.
Deposit date:2002-12-30
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases
Proc.Natl.Acad.Sci.USA, 100, 2003
1NJ1
DownloadVisualize
BU of 1nj1 by Molmil
Crystal structure of Prolyl-tRNA Synthetase from Methanothermobacter thermautotrophicus bound to cysteine sulfamoyl adenylate
Descriptor: 5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE, MAGNESIUM ION, Proline-tRNA Synthetase, ...
Authors:Kamtekar, S, Kennedy, W.D, Wang, J, Stathopoulos, C, Soll, D, Steitz, T.A.
Deposit date:2002-12-30
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases
Proc.Natl.Acad.Sci.USA, 100, 2003
7B2H
DownloadVisualize
BU of 7b2h by Molmil
Crystal structure of the methyl-coenzyme M reductase from Methanothermobacter Marburgensis derivatized with xenon
Descriptor: 1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Wagner, T, Lemaire, O.N, Engilberge, S.
Deposit date:2020-11-27
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal structure of a key enzyme for anaerobic ethane activation.
Science, 373, 2021
1M21
DownloadVisualize
BU of 1m21 by Molmil
Crystal structure analysis of the peptide amidase PAM in complex with the competitive inhibitor chymostatin
Descriptor: CHYMOSTATIN, Peptide Amidase
Authors:Labahn, J, Neumann, S, Buldt, G, Kula, M.-R, Granzin, J.
Deposit date:2002-06-21
Release date:2002-10-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An alternative mechanism for amidase signature enzymes
J.MOL.BIOL., 322, 2002
1C4S
DownloadVisualize
BU of 1c4s by Molmil
CHONDROITIN-4-SULFATE. THE STRUCTURE OF A SULFATED GLYCOSAMINOGLYCAN
Descriptor: 2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-4-deoxy-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-4-deoxy-beta-D-glucopyranuronic acid, SODIUM ION
Authors:Arnott, S.
Deposit date:1978-05-23
Release date:1980-03-28
Last modified:2024-02-07
Method:FIBER DIFFRACTION (3 Å)
Cite:Chondroitin 4-sulfate: the structure of a sulfated glycosaminoglycan.
J.Mol.Biol., 125, 1978
2WBM
DownloadVisualize
BU of 2wbm by Molmil
Crystal structure of mthSBDS, the homologue of the Shwachman-Bodian- Diamond syndrome protein in the euriarchaeon Methanothermobacter thermautotrophicus
Descriptor: CHLORIDE ION, GLYCEROL, RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG, ...
Authors:Ng, C.L, Isupov, M.N, Lebedev, A.A, Ortiz-Lombardia, M, Antson, A.A.
Deposit date:2009-03-02
Release date:2009-06-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Conformational Flexibility and Molecular Interactions of an Archaeal Homologue of the Shwachman-Bodian-Diamond Syndrome Protein.
Bmc Struct.Biol., 9, 2009
6QGS
DownloadVisualize
BU of 6qgs by Molmil
Crystal structure of APT1 bound to palmitic acid.
Descriptor: Acyl-protein thioesterase 1, CHLORIDE ION, PALMITIC ACID
Authors:Audagnotto, M, Marcaida, M.J, Ho, S, Pojer, F, Van der Goot, G, Dal Peraro, M.
Deposit date:2019-01-12
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.755 Å)
Cite:Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains.
Nat.Chem.Biol., 2021
6QGQ
DownloadVisualize
BU of 6qgq by Molmil
Crystal structure of APT1 C2S mutant bound to palmitic acid.
Descriptor: Acyl-protein thioesterase 1, GLYCEROL, PALMITIC ACID
Authors:Audagnotto, M, Marcaida, M.J, Ho, S, Pojer, F, Van der Goot, G, Dal Peraro, M.
Deposit date:2019-01-12
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains.
Nat.Chem.Biol., 2021
6QGO
DownloadVisualize
BU of 6qgo by Molmil
Crystal structure of APT1 S119A mutant bound to palmitic acid.
Descriptor: Acyl-protein thioesterase 1, PALMITIC ACID
Authors:Audagnotto, M, Marcaida, M.J, Ho, S, Pojer, F, Van der Goot, G, Dal Peraro, M.
Deposit date:2019-01-12
Release date:2020-02-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains.
Nat.Chem.Biol., 2021
2NTM
DownloadVisualize
BU of 2ntm by Molmil
Crystal structure of PurO from Methanothermobacter thermoautotrophicus
Descriptor: IMP cyclohydrolase
Authors:Kang, Y.N, Tran, A, White, R.H, Ealick, S.E.
Deposit date:2006-11-07
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A novel function for the N-terminal nucleophile hydrolase fold demonstrated by the structure of an archaeal inosine monophosphate cyclohydrolase.
Biochemistry, 46, 2007
2NTK
DownloadVisualize
BU of 2ntk by Molmil
Crystal structure of PurO/IMP from Methanothermobacter thermoautotrophicus
Descriptor: IMP cyclohydrolase, INOSINIC ACID
Authors:Kang, Y.N, Tran, A, White, R.H, Ealick, S.E.
Deposit date:2006-11-07
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:A novel function for the N-terminal nucleophile hydrolase fold demonstrated by the structure of an archaeal inosine monophosphate cyclohydrolase.
Biochemistry, 46, 2007
2NTL
DownloadVisualize
BU of 2ntl by Molmil
Crystal structure of PurO/AICAR from Methanothermobacter thermoautotrophicus
Descriptor: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, IMP cyclohydrolase
Authors:Kang, Y.N, Tran, A, White, R.H, Ealick, S.E.
Deposit date:2006-11-07
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A novel function for the N-terminal nucleophile hydrolase fold demonstrated by the structure of an archaeal inosine monophosphate cyclohydrolase.
Biochemistry, 46, 2007
4U4G
DownloadVisualize
BU of 4u4g by Molmil
Structure of GluA2* in complex with competitive antagonist ZK 200775
Descriptor: Glutamate receptor 2, beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid
Authors:Yelshanskaya, M.V, Li, M, Sobolevsky, A.I.
Deposit date:2014-07-23
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.49 Å)
Cite:Structure of an agonist-bound ionotropic glutamate receptor.
Science, 345, 2014
3G4T
DownloadVisualize
BU of 3g4t by Molmil
Mth0212 (WT) in complex with a 7bp dsDNA
Descriptor: 5'-D(*CP*G*TP*AP*CP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*(UPS)P*TP*AP*CP*G)-3', Exodeoxyribonuclease, ...
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-02-04
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
3G3C
DownloadVisualize
BU of 3g3c by Molmil
Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 5'-D(*CP*GP*TP*AP*(UPS)P*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*AP*CP*G)-3', ...
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-02-02
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
2JVE
DownloadVisualize
BU of 2jve by Molmil
Solution structure of the extracellular domain of Prod1, a protein implicated in proximodistal identity during amphibian limb regeneration
Descriptor: Prod 1
Authors:Garza-Garcia, A, Harris, R, Esposito, D, Driscoll, P.C.
Deposit date:2007-09-19
Release date:2008-09-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and phylogenetics of Prod1, a member of the three-finger protein superfamily implicated in salamander limb regeneration.
Plos One, 4, 2009
1DP2
DownloadVisualize
BU of 1dp2 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN RHODANESE AND LIPOATE
Descriptor: 5-[(3S)-1,2-dithiolan-3-yl]pentanoic acid, RHODANESE
Authors:Zanotti, G, Cianci, M.
Deposit date:1999-12-23
Release date:2000-12-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Specific interaction of lipoate at the active site of rhodanese.
Biochim.Biophys.Acta, 1481, 2000
7P4V
DownloadVisualize
BU of 7p4v by Molmil
GlnK1 from Methanothermococcus thermolithotrophicus with dADP at a resolution of 1.94 A
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, GlnK1 from Methanothermococcus thermolithotrophicus
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7P50
DownloadVisualize
BU of 7p50 by Molmil
GlnK2 from Methanothermococcus thermolithotrophicus in complex with Mg-ATP and 2-oxoglutarate at a resolution of 1.16 A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-OXOGLUTARIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
7TXF
DownloadVisualize
BU of 7txf by Molmil
The allosteric binding mode of alphaD-conotoxin VxXXB
Descriptor: Acetylcholine-binding protein, Alpha-conotoxin VxXXB
Authors:Ho, T.N.T, Abraham, N, Lewis, R.J.
Deposit date:2022-02-09
Release date:2023-04-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Unravelling the allosteric binding mode of alpha D-VxXXB at nicotinic acetylcholine receptors.
Front Pharmacol, 14, 2023
1YZ2
DownloadVisualize
BU of 1yz2 by Molmil
Solution structure of Am2766
Descriptor: Delta-conotoxin Am 2766
Authors:Sarma, S.P, Kumar, G.S, Sudarslal, S, Iengar, P, Sikdar, S.K, Krishnan, K.S, Balaram, P.
Deposit date:2005-02-26
Release date:2006-02-07
Last modified:2019-11-06
Method:SOLUTION NMR
Cite:Solution Structure of delta-Am2766: A Highly Hydrophobic delta-Conotoxin from Conus amadis That Inhibits Inactivation of Neuronal Voltage-Gated Sodium Channels
CHEM.BIODIVERS., 2, 2005
6MJD
DownloadVisualize
BU of 6mjd by Molmil
NMR Solution structure of GIIIC
Descriptor: ARG-ASP-CYS-CYS-THR-HYP-HYP-LYS-LYS-CYS-LYS-ASP-ARG-ARG-CYS-LYS-HYP-LEU-LYS-CYS-CYS-ALA-NH2
Authors:Harvey, P.J, Durek, T, Craik, D.J.
Deposit date:2018-09-20
Release date:2018-11-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Structure of mu-Conotoxin GIIIC: Leucine 18 Induces Local Repacking of the N-Terminus Resulting in Reduced NaVChannel Potency.
Molecules, 23, 2018
7P4Y
DownloadVisualize
BU of 7p4y by Molmil
GlnK2 from Methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 A
Descriptor: CHLORIDE ION, GlnK2 from Methanothermococcus thermolithotrophicus
Authors:Mueller, M.-C, Wagner, T.
Deposit date:2021-07-13
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Int J Mol Sci, 22, 2021
8TFN
DownloadVisualize
BU of 8tfn by Molmil
Structure of anti-TCRvbeta6-5 antibody in complex with the cognate TCR
Descriptor: Anti-TCRVb6-5 Fab heavy chain, Anti-TCRVb6-5 Fab light chain, TRAV12-3, ...
Authors:Katragadda, M, Servatalab, R, Wirth, J.
Deposit date:2023-07-11
Release date:2023-11-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Innate TCR beta-chain engagement drives human T cells toward distinct memory-like effector phenotypes with immunotherapeutic potentials.
Sci Adv, 9, 2023
5UG3
DownloadVisualize
BU of 5ug3 by Molmil
NMR SOLUTION STRUCTURE OF ALPHA-CONOTOXIN GID MUTANT A10V
Descriptor: Alpha-conotoxin GID
Authors:Hussein, A.K, Leffler, A.E, Zebroski, H.A, Powell, S.R, Kuryatov, A, Filipenko, P, Gorson, J, Heizmann, A, Lyskov, S, Nicke, A, Lindstrom, J, Rudy, B, Bonneau, R, Holford, M, Poget, S.F.
Deposit date:2017-01-06
Release date:2017-09-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Discovery of peptide ligands through docking and virtual screening at nicotinic acetylcholine receptor homology models.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon