PDB: 52399 resultsInfo pagesStatus searchChemie searchBIRD

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8D9I	gRAMP non-matching PFS-with Mg Descriptor: RAMP superfamily protein, RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*A)-3'), ... Authors: Hu, C, Nam, K.H, Schuler, G, Ke, A. Deposit date: 2022-06-09 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Craspase is a CRISPR RNA-guided, RNA-activated protease. Science, 377, 2022
6LC9	Crystal structure of AmpC Ent385 complex form with ceftazidime Descriptor: 1,4-DIETHYLENE DIOXIDE, ACYLATED CEFTAZIDIME, Beta-lactamase, ... Authors: Kawai, A, Doi, Y. Deposit date: 2019-11-18 Release date: 2020-04-22 Last modified: 2022-03-23 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural Basis of Reduced Susceptibility to Ceftazidime-Avibactam and Cefiderocol inEnterobacter cloacaeDue to AmpC R2 Loop Deletion. Antimicrob.Agents Chemother., 64, 2020
6LC7	Crystal structure of AmpC Ent385 free form Descriptor: 1,4-DIETHYLENE DIOXIDE, Beta-lactamase, GLYCEROL, ... Authors: Kawai, A, Doi, Y. Deposit date: 2019-11-18 Release date: 2020-04-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural Basis of Reduced Susceptibility to Ceftazidime-Avibactam and Cefiderocol inEnterobacter cloacaeDue to AmpC R2 Loop Deletion. Antimicrob.Agents Chemother., 64, 2020
8D9E	gRAMP-match PFS target Descriptor: RAMP superfamily protein, RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*UP*A)-3'), ... Authors: Hu, C, Nam, K.H, Schuler, G, Ke, A. Deposit date: 2022-06-09 Release date: 2023-06-14 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.76 Å) Cite: Craspase is a CRISPR RNA-guided, RNA-activated protease. Science, 377, 2022
3G3N	PDE7A catalytic domain in complex with 3-(2,6-difluorophenyl)-2-(methylthio)quinazolin-4(3H)-one Descriptor: 3-(2,6-difluorophenyl)-2-(methylthio)quinazolin-4(3H)-one, High affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A, MAGNESIUM ION, ... Authors: Castano, T, Wang, H. Deposit date: 2009-02-02 Release date: 2009-04-28 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Synthesis, structural analysis, and biological evaluation of thioxoquinazoline derivatives as phosphodiesterase 7 inhibitors Chemmedchem, 4, 2009
7DTA	Solution structure of the C-clamp domain from human HDBP1 in complex with DNA Descriptor: DNA (5'-D(*GP*TP*CP*CP*CP*GP*GP*CP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*CP*CP*GP*GP*GP*AP*C)-3'), SLC2A4 regulator, ... Authors: Duan, B, Xia, B. Deposit date: 2021-01-04 Release date: 2021-07-21 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Selective Nonmethylated CpG DNA Recognition Mechanism of Cysteine Clamp Domains. J.Am.Chem.Soc., 143, 2021
6MAN	Crystal structure of a DnaN sliding clamp DNA polymerase III subunit beta from Rickettsia bellii RML369-C Descriptor: 1,2-ETHANEDIOL, Beta sliding clamp, THIOCYANATE ION Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-08-28 Release date: 2018-09-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of a DnaN sliding clamp DNA polymerase III subunit beta from Rickettsia bellii RML369-C To Be Published
6NJM	Architecture and subunit arrangement of native AMPA receptors Descriptor: 15F1 Fab heavy chain, 15F1 Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Gouaux, E, Zhao, Y. Deposit date: 2019-01-03 Release date: 2019-04-24 Last modified: 2021-05-05 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Architecture and subunit arrangement of native AMPA receptors elucidated by cryo-EM. Science, 364, 2019
7SGZ	Structure of the yeast Rad24-RFC loader bound to DNA and the closed 9-1-1 clamp Descriptor: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, Crick strand, ... Authors: Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. Deposit date: 2021-10-07 Release date: 2022-03-23 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp. Nat.Struct.Mol.Biol., 29, 2022
7SH2	Structure of the yeast Rad24-RFC loader bound to DNA and the open 9-1-1 clamp Descriptor: ADENOSINE-5'-DIPHOSPHATE, Checkpoint protein RAD24, Crick strand, ... Authors: Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. Deposit date: 2021-10-07 Release date: 2022-03-23 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.23 Å) Cite: DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp. Nat.Struct.Mol.Biol., 29, 2022
5I0W	IRON AND COPPER-BOUND P19 FROM CAMPYLOBACTER JEJUNI UNDER REDUCING CONDITIONS Descriptor: CHLORIDE ION, COPPER (I) ION, FE (II) ION, ... Authors: Chan, A.C, Murphy, M.E. Deposit date: 2016-02-04 Release date: 2017-02-08 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: A copper site is required for iron transport by the periplasmic proteins P19 and FetP. Metallomics, 12, 2020
7LDF	High resolution NMR solution structure of a de novo designed minimal thioredoxin fold protein Descriptor: Minimal thioredoxin fold protein, ems_thioM_802 Authors: Urbauer, J.L, Strauch, E.M. Deposit date: 2021-01-13 Release date: 2022-07-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Sampling of structure and sequence space of small protein folds. Nat Commun, 13, 2022
7D7D	CryoEM structure of gp45-dependent transcription activation complex Descriptor: DNA (nontemplate strand), DNA (template strand), DNA polymerase clamp, ... Authors: Shi, J, Wen, A, Jin, S, Feng, Y. Deposit date: 2020-10-03 Release date: 2021-01-20 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Transcription activation by a sliding clamp. Nat Commun, 12, 2021
1U7R	Crystal structure of Native Sperm Whale myoglobin from low ionic strength enviroment (Form2 ) Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE Authors: Zhang, W, Phillips Jr, G.N. Deposit date: 2004-08-04 Release date: 2005-07-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins, 70, 2008
6EEC	Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter captured by Corallopyronin Descriptor: DNA (63-MER), DNA (65-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J. Deposit date: 2018-08-13 Release date: 2018-11-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.55 Å) Cite: Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding. Nature, 565, 2019
6EDT	Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter Descriptor: DNA (65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J. Deposit date: 2018-08-10 Release date: 2018-11-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY Cite: Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding. Nature, 565, 2019
6ENY	Structure of the human PLC editing module Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, Calreticulin, ... Authors: Trowitzsch, S, Januliene, D, Blees, A, Moeller, A, Tampe, R. Deposit date: 2017-10-07 Release date: 2017-11-29 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (5.8 Å) Cite: Structure of the human MHC-I peptide-loading complex. Nature, 551, 2017
5IF6	Structure of a computationally designed 17-OHP binder Descriptor: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9_1c, SODIUM ION Authors: Stoddard, B.L, Doyle, L.A. Deposit date: 2016-02-25 Release date: 2017-03-01 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Sampling and energy evaluation challenges in ligand binding protein design. Protein Sci., 26, 2017
7Z6H	Structure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp Descriptor: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17, Checkpoint protein HUS1, ... Authors: Day, M, Oliver, A.W, Pearl, L.H. Deposit date: 2022-03-11 Release date: 2022-05-04 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Structure of the human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp bound to a dsDNA-ssDNA junction. Nucleic Acids Res., 50, 2022
2EKQ	Structure of TT0495 protein from Thermus thermophilus Descriptor: 2-deoxy-D-gluconate 3-dehydrogenase, GLYCEROL, SULFATE ION Authors: Lokanath, N.K, Pampa, K.J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-23 Release date: 2008-04-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8 Acta Crystallogr.,Sect.D, 70, 2014
6X9C	Structure of proline utilization A with L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Bifunctional protein PutA, DI(HYDROXYETHYL)ETHER, ... Authors: Tanner, J.J, Campbell, A.C. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys., 698, 2020
6X99	Structure of proline utilization A with D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site Descriptor: Bifunctional protein PutA, D-PROLINE, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Tanner, J.J, Campbell, A.C. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys., 698, 2020
6X9A	Structure of proline utilization A with trans-4-hydroxy-D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site Descriptor: (4S)-4-hydroxy-D-proline, Bifunctional protein PutA, DI(HYDROXYETHYL)ETHER, ... Authors: Tanner, J.J, Campbell, A.C. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys., 698, 2020
6X9D	Structure of proline utilization A with trans-4-hydroxy-L-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site Descriptor: 4-HYDROXYPROLINE, Bifunctional protein PutA, DI(HYDROXYETHYL)ETHER, ... Authors: Tanner, J.J, Campbell, A.C. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys., 698, 2020
7QPD	Structure of the human MHC I peptide-loading complex editing module Descriptor: Beta-2-microglobulin, Calreticulin, HLA class I histocompatibility antigen, ... Authors: Domnick, A, Susac, L, Trowitzsch, S, Thomas, C, Tampe, R. Deposit date: 2022-01-03 Release date: 2022-07-20 Last modified: 2022-08-24 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Molecular basis of MHC I quality control in the peptide loading complex. Nat Commun, 13, 2022

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