Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8TGY
DownloadVisualize
BU of 8tgy by Molmil
Crystal structure of Gdx-Clo from Small Multidrug Resistance family of transporters in complex with guanylurea
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, L10 Monobody, LAURYL DIMETHYLAMINE-N-OXIDE, ...
Authors:Lucero, R.M, Stockbridge, R.B.
Deposit date:2023-07-13
Release date:2023-08-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Transport of metformin metabolites by guanidinium exporters of the Small Multidrug Resistance family.
Biorxiv, 2023
6AWU
DownloadVisualize
BU of 6awu by Molmil
Structure of PR 10 Allergen Ara h 8.01 in complex with caffeic acid
Descriptor: Ara h 8 allergen, CAFFEIC ACID, CHLORIDE ION, ...
Authors:Offermann, L.R, McBride, J, Perdue, M, Hurlburt, B.K, Maleki, S.J, Pote, S.S, Chruszcz, M.
Deposit date:2017-09-06
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure of PR-10 Allergen Ara h 8.01.
To Be Published
5YAD
DownloadVisualize
BU of 5yad by Molmil
Crystal structure of Marf1 Lotus domain from Mus musculus
Descriptor: GLYCEROL, Meiosis regulator and mRNA stability factor 1, SULFATE ION
Authors:Yao, Q.Q, Wu, B.X, Ma, J.B.
Deposit date:2017-08-31
Release date:2018-10-03
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5OSK
DownloadVisualize
BU of 5osk by Molmil
Tubulin-7j complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-(2,5-Dimethoxybenzyl)-7-sulfamoyloxy-6-methoxy-3,4-dihydroquinazolin-2(1H)-one, CALCIUM ION, ...
Authors:Menchon, G, Prota, A.E, Steinmetz, M.O, Potter, B.V.L.
Deposit date:2017-08-17
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Quinazolinone-Based Anticancer Agents: Synthesis, Antiproliferative SAR, Antitubulin Activity, and Tubulin Co-crystal Structure.
J. Med. Chem., 61, 2018
5CD3
DownloadVisualize
BU of 5cd3 by Molmil
Structure of immature VRC01-class antibody DRVIA7
Descriptor: DRVIA7 Heavy Chain, DRVIA7 Light Chain
Authors:Kong, L, Wilson, I.A.
Deposit date:2015-07-02
Release date:2016-04-06
Last modified:2018-09-05
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Key gp120 Glycans Pose Roadblocks to the Rapid Development of VRC01-Class Antibodies in an HIV-1-Infected Chinese Donor.
Immunity, 44, 2016
2V08
DownloadVisualize
BU of 2v08 by Molmil
Structure of wild-type Phormidium laminosum cytochrome c6
Descriptor: CHLORIDE ION, CYTOCHROME C6, HEME C, ...
Authors:Worrall, J.A.R, Schlarb-Ridley, B.G, Reda, T, Marcaida, M.J, Moorlen, R.J, Wastl, J, Hirst, J, Bendall, D.S, Luisi, B.F, Howe, C.J.
Deposit date:2007-05-10
Release date:2007-07-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Modulation of heme redox potential in the cytochrome c6 family.
J. Am. Chem. Soc., 129, 2007
5BVG
DownloadVisualize
BU of 5bvg by Molmil
Selenium incorporated nitrogenase MoFe-protein (Av1-Se2B) from A. vinelandii
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CHLORIDE ION, FE (II) ION, ...
Authors:Spatzal, T, Perez, K.A, Howard, J.B, Rees, D.C.
Deposit date:2015-06-05
Release date:2015-12-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor.
Elife, 4, 2015
6UZC
DownloadVisualize
BU of 6uzc by Molmil
Portal vertex structure of bacteriophage T4
Descriptor: Major capsid protein, Portal protein
Authors:Fang, Q, Fokine, A, Rao, V.B.
Deposit date:2019-11-14
Release date:2020-04-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural morphing in a symmetry-mismatched viral vertex.
Nat Commun, 11, 2020
5F6Y
DownloadVisualize
BU of 5f6y by Molmil
Crystal structure of Ubc9 (K48/K49A/E54A) complexed with Fragment 2 (mercaptobenzoxazole)
Descriptor: 5-chloranyl-3~{H}-1,3-benzoxazole-2-thione, SUMO-conjugating enzyme UBC9
Authors:Lountos, G.T, Hewitt, W.M, Zlotkowski, K, Dahlhauser, S, Saunders, L.B, Needle, D, Tropea, J.E, Zhan, C, Wei, G, Ma, B, Nussinov, R, Schneekloth, J.S.Jr, Waugh, D.S.
Deposit date:2015-12-07
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Insights Into the Allosteric Inhibition of the SUMO E2 Enzyme Ubc9.
Angew.Chem.Int.Ed.Engl., 55, 2016
5TXL
DownloadVisualize
BU of 5txl by Molmil
STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING DATP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG) P*CP*GP*CP*CP*GP)-3'), ...
Authors:Das, K, Martinez, S.M, Arnold, E.
Deposit date:2016-11-17
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Structural Insights into HIV Reverse Transcriptase Mutations Q151M and Q151M Complex That Confer Multinucleoside Drug Resistance.
Antimicrob. Agents Chemother., 61, 2017
5C2U
DownloadVisualize
BU of 5c2u by Molmil
Ferredoxin-like domain of nucleoporin Nup54 bound to a nanobody
Descriptor: Nanobody, Nup54
Authors:Chug, H, Trakhanov, S, Hulsmann, B.B, Pleiner, T, Gorlich, D.
Deposit date:2015-06-16
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the metazoan Nup62Nup58Nup54 nucleoporin complex.
Science, 350, 2015
8TFQ
DownloadVisualize
BU of 8tfq by Molmil
Fab from C10-S66K antibody in complex with fentanyl
Descriptor: Heavy chain from Fab of C10_S66K antibody, Light chain from Fab of C10_S66K antibody, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide
Authors:Pholcharee, T, Wilson, I.A.
Deposit date:2023-07-11
Release date:2023-08-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Engineered Human-Antibody Fragment with Fentanyl Pan-Specificity That Reverses Carfentanil-Induced Respiratory Depression.
Acs Chem Neurosci, 14, 2023
8CZ9
DownloadVisualize
BU of 8cz9 by Molmil
Crystal Structure of the E372K LNK SH2 Domain mutant in Complex with a JAK2 pY813 Phosphopeptide
Descriptor: CHLORIDE ION, JAK2 pY813 phosphopeptide, SH2B adapter protein 3
Authors:Morris, R, Kershaw, N.J, Babon, J.J.
Deposit date:2022-05-24
Release date:2023-05-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Rare SH2B3 coding variants in lupus patients impair B cell tolerance and predispose to autoimmunity.
J.Exp.Med., 221, 2024
5BVH
DownloadVisualize
BU of 5bvh by Molmil
CO-bound form of Selenium incorporated nitrogenase MoFe-protein (Av1-Se-CO) from A. vinelandii
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, CARBON MONOXIDE, CHLORIDE ION, ...
Authors:Spatzal, T, Perez, K.A, Howard, J.B, Rees, D.C.
Deposit date:2015-06-05
Release date:2015-12-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor.
Elife, 4, 2015
4MMU
DownloadVisualize
BU of 4mmu by Molmil
Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1 at pH 5.5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F1 fused with Fibritin trimerization domain, Fusion glycoprotein F2, ...
Authors:Joyce, M.G, Mclellan, J.S, Stewart-Jones, G.B.E, Sastry, M, Yang, Y, Graham, B.S, Kwong, P.D.
Deposit date:2013-09-09
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus.
Science, 342, 2013
8CWK
DownloadVisualize
BU of 8cwk by Molmil
Fab arm of antibodies 4G1-C2 and 10G4 bound to CoV-2 receptor binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Heavy chain of Fab arm of antibody 10G4, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-05-19
Release date:2023-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.368 Å)
Cite:Neutralization of CoV-2 omicron sublineages by affinity-matured class 5 antibodies
To Be Published
5OHZ
DownloadVisualize
BU of 5ohz by Molmil
Crystal structure of Mycolicibacterium hassiacum glucosylglycerate hydrolase (MhGgH) - SeMet derivative
Descriptor: GLYCEROL, Hydrolase, SERINE
Authors:Cereija, T.B, Macedo-Ribeiro, S, Pereira, P.J.B.
Deposit date:2017-07-18
Release date:2018-08-08
Last modified:2019-08-28
Method:X-RAY DIFFRACTION (2.036 Å)
Cite:The structural characterization of a glucosylglycerate hydrolase provides insights into the molecular mechanism of mycobacterial recovery from nitrogen starvation.
Iucrj, 6, 2019
8T0M
DownloadVisualize
BU of 8t0m by Molmil
Proteasome 20S core particle from Pre1-1 Pre4-1 Double mutant
Descriptor: Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Walsh Jr, R.M, Rawson, S, Schnell, H, Velez, B, Hanna, J.
Deposit date:2023-06-01
Release date:2023-09-06
Last modified:2023-10-25
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure of the preholoproteasome reveals late steps in proteasome core particle biogenesis.
Nat.Struct.Mol.Biol., 30, 2023
7FEM
DownloadVisualize
BU of 7fem by Molmil
SARS-CoV-2 B.1.1.7 S-ACE2 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Wen, Z.L, Zhu, Y, Sun, F.
Deposit date:2021-07-21
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure-based evidence for the enhanced transmissibility of the dominant SARS-CoV-2 B.1.1.7 variant (Alpha).
Cell Discov, 7, 2021
8T08
DownloadVisualize
BU of 8t08 by Molmil
Preholo-Proteasome from Pre1-1 Pre4-1 Double Mutant
Descriptor: Proteasome assembly chaperone 2, Proteasome chaperone 1, Proteasome maturation factor UMP1, ...
Authors:Walsh Jr, R.M, Rawson, S, Schnell, H, Velez, B, Hanna, J.
Deposit date:2023-05-31
Release date:2023-09-06
Last modified:2023-10-25
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the preholoproteasome reveals late steps in proteasome core particle biogenesis.
Nat.Struct.Mol.Biol., 30, 2023
5L9T
DownloadVisualize
BU of 5l9t by Molmil
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Brown, N.G, VanderLinden, R, Dube, P, Haselbach, D, Peters, J.M, Stark, H, Schulman, B.A.
Deposit date:2016-06-11
Release date:2016-10-26
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C.
Cell, 165, 2016
5EZM
DownloadVisualize
BU of 5ezm by Molmil
Crystal Structure of ArnT from Cupriavidus metallidurans in the apo state
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family, CHLORIDE ION, ...
Authors:Petrou, V.I, Clarke, O.B, Tomasek, D, Banerjee, S, Rajashankar, K.R, Mancia, F, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2015-11-26
Release date:2016-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.
Science, 351, 2016
3IAD
DownloadVisualize
BU of 3iad by Molmil
Crystal structure of human phosphodiesterase 4D with bound allosteric modulator
Descriptor: 1-{4-[(2-fluoro-6-methoxy-3'-nitrobiphenyl-3-yl)methyl]phenyl}urea, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, ...
Authors:Staker, B.L, Burgin Jr, A.B.
Deposit date:2009-07-13
Release date:2010-01-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Design of phosphodiesterase 4D (PDE4D) allosteric modulators for enhancing cognition with improved safety.
Nat.Biotechnol., 28, 2010
8JJ6
DownloadVisualize
BU of 8jj6 by Molmil
Structure of the NELF-BCE complex
Descriptor: NELF-E, Negative elongation factor B, Negative elongation factor complex member C/D
Authors:Wang, Z, Cao, Y, Qin, Y.
Deposit date:2023-05-29
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:The crystal structure of the human NELF-B, NELF-C, and NELF-E trimeric complex
To Be Published
6ARB
DownloadVisualize
BU of 6arb by Molmil
CRYSTAL STRUCTURE OF PROTEIN CitE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MAGNESIUM, PYRUVATE AND COENZYME A
Descriptor: COENZYME A, Citrate lyase subunit beta-like protein, GLYCEROL, ...
Authors:Fedorov, A.A, Fedorov, E.V, Wang, H, Bonanno, J.B, Carvalho, L, Almo, S.C.
Deposit date:2017-08-22
Release date:2018-08-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.717 Å)
Cite:An essential bifunctional enzyme inMycobacterium tuberculosisfor itaconate dissimilation and leucine catabolism.
Proc.Natl.Acad.Sci.USA, 116, 2019

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon