Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7NWG
DownloadVisualize
BU of 7nwg by Molmil
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Descriptor: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C.
Deposit date:2021-03-16
Release date:2021-07-07
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA.
Nucleic Acids Res., 49, 2021
7NZ0
DownloadVisualize
BU of 7nz0 by Molmil
Cryo-EM structure of the MukBEF-MatP-DNA monomer (open conformation)
Descriptor: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ...
Authors:Buermann, F, Lowe, J.
Deposit date:2021-03-23
Release date:2021-07-07
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites.
Mol.Cell, 81, 2021
7NZ3
DownloadVisualize
BU of 7nz3 by Molmil
Cryo-EM structure of apposed MukBEF-MatP monomers on DNA
Descriptor: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ...
Authors:Buermann, F, Lowe, J.
Deposit date:2021-03-23
Release date:2021-07-07
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites.
Mol.Cell, 81, 2021
7OJ8
DownloadVisualize
BU of 7oj8 by Molmil
ABCG2 E1S turnover-2 state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Broad substrate specificity ATP-binding cassette transporter ABCG2, CHOLESTEROL, ...
Authors:Ni, D, Yu, Q, Kowal, J, Manolaridis, I, Jackson, S.M, Stahlberg, H, Locher, K.P.
Deposit date:2021-05-14
Release date:2021-07-21
Last modified:2021-07-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of ABCG2 under turnover conditions reveal a key step in the drug transport mechanism.
Nat Commun, 12, 2021
6P4D
DownloadVisualize
BU of 6p4d by Molmil
Hen egg lysozyme (HEL) containing three point mutations (HEL3x): R21Q, R73E, and D101R
Descriptor: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2019-05-27
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proc.Natl.Acad.Sci.USA, 117, 2020
6P0U
DownloadVisualize
BU of 6p0u by Molmil
Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E. coli Fis and phage lambda Xis
Descriptor: DNA (27-MER), FX1-2, DNA-binding protein Fis, ...
Authors:Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2019-05-17
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Cooperative DNA binding by proteins through DNA shape complementarity.
Nucleic Acids Res., 47, 2019
6VZH
DownloadVisualize
BU of 6vzh by Molmil
Structure of Human Vaccinia-related Kinase 1 (VRK1) Bound to LDSM311
Descriptor: (7~{R})-2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-5,7-dimethyl-8-prop-2-ynyl-7~{H}-pteridin-6-one, 1,2-ETHANEDIOL, SULFATE ION, ...
Authors:dos Reis, C.V, Dutra, L.A, Gama, F, Ferreira, M, Mascarello, A, Azevedo, H, Guimaraes, C, Massirer, K.B, Arruda, P, Edwards, A.M, Counago, R.M, Structural Genomics Consortium (SGC)
Deposit date:2020-02-28
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of Human Vaccinia-related Kinase 1 (VRK1) Bound to LDSM311
To be Published
6PBH
DownloadVisualize
BU of 6pbh by Molmil
Crystal Structure of HLA-A*68:01 in complex with NP145-156, a 12 mer influenza peptide
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-68 alpha chain, ...
Authors:Gras, S.
Deposit date:2019-06-13
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Challenging immunodominance of influenza-specific CD8+T cell responses restricted by the risk-associated HLA-A*68:01 allomorph.
Nat Commun, 10, 2019
6WAQ
DownloadVisualize
BU of 6waq by Molmil
Crystal structure of the SARS-CoV-1 RBD bound by the cross-reactive single-domain antibody SARS VHH-72
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, nanobody SARS VHH-72
Authors:Wrapp, D, McLellan, J.S.
Deposit date:2020-03-25
Release date:2020-04-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Potent Neutralization of Betacoronaviruses by Single-Domain Camelid Antibodies.
Cell, 181, 2020
6PL9
DownloadVisualize
BU of 6pl9 by Molmil
Adduct formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidaz ol-2-ylidene)(eta5-pentamethylcyclopentadienyl)rhodium(III) with HEWL
Descriptor: 2-(1-chloranyl-2,3,4,5,6-pentamethyl-1$l^{7}-rhodapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexan-1-yl)-1,3-dimethyl-benzimidazole, Lysozyme, SODIUM ION, ...
Authors:Sullivan, M.P, Hartinger, C.G, Goldstone, D.C.
Deposit date:2019-06-30
Release date:2020-11-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Probing the Paradigm of Promiscuity for N-Heterocyclic Carbene Complexes and their Protein Adduct Formation.
Angew.Chem.Int.Ed.Engl., 2021
6P0T
DownloadVisualize
BU of 6p0t by Molmil
Crystal structure of ternary DNA complex "FX(1-2)-1Xis" containing E. coli Fis and phage lambda Xis
Descriptor: DNA (27-MER), FX1-2, DNA-binding protein Fis, ...
Authors:Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2019-05-17
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.603 Å)
Cite:Cooperative DNA binding by proteins through DNA shape complementarity.
Nucleic Acids Res., 47, 2019
6PQ9
DownloadVisualize
BU of 6pq9 by Molmil
Crystal Structure of TLA-1 S70G extended spectrum Beta-lactamase
Descriptor: ACETATE ION, ASPARTIC ACID, Beta-lactamase, ...
Authors:Rudino-Pinera, E, Cifuentes-Castro, V.H, Rodriguez-Alamazan, C.
Deposit date:2019-07-08
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:The crystal structure of ESBL TLA-1 in complex with clavulanic acid reveals a second acylation site.
Biochem.Biophys.Res.Commun., 522, 2020
6P4A
DownloadVisualize
BU of 6p4a by Molmil
HyHEL10 Fab complexed with hen egg lysozyme carrying two mutations (HEL2x-rigid): R21Q and R73E
Descriptor: HyHEL10 Fab heavy chain, HyHEL10 Fab light chain, Lysozyme C
Authors:Langley, D.B, Christ, D.
Deposit date:2019-05-27
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proc.Natl.Acad.Sci.USA, 117, 2020
6OZX
DownloadVisualize
BU of 6ozx by Molmil
Wild type GapR crystal structure 1 from C. crescentus
Descriptor: UPF0335 protein CC_3319
Authors:Tarry, M, Harmel, C, Taylor, J.A, Marczynski, G.T, Schmeing, T.M.
Deposit date:2019-05-16
Release date:2019-11-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structures of GapR reveal a central channel which could accommodate B-DNA.
Sci Rep, 9, 2019
5PO8
DownloadVisualize
BU of 5po8 by Molmil
PanDDA analysis group deposition -- Crystal Structure of BRD1 in complex with N07808b
Descriptor: 1,2-ETHANEDIOL, 6-amino-1-methyl-3,4-dihydroquinolin-2(1H)-one, Bromodomain-containing protein 1, ...
Authors:Pearce, N.M, Krojer, T, Talon, R, Bradley, A.R, Fairhead, M, Sethi, R, Wright, N, MacLean, E, Collins, P, Brandao-Neto, J, Douangamath, A, Renjie, Z, Dias, A, Ng, J, Brennan, P.E, Cox, O, Bountra, C, Arrowsmith, C.H, Edwards, A, von Delft, F.
Deposit date:2017-02-07
Release date:2017-03-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density.
Nat Commun, 8, 2017
6P8C
DownloadVisualize
BU of 6p8c by Molmil
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase (MthRED) from Methanothermobacter thermautotrophicus
Descriptor: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase, CHLORIDE ION, GLYCEROL, ...
Authors:Carbone, V, Schofield, L.R, Hannus, I, Sutherland-Smith, A.J, Ronimus, R.S.
Deposit date:2019-06-06
Release date:2020-06-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The Crystal Structure of 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase (MthRED) from Methanothermobacter thermautotrophicus
To Be Published
6W8K
DownloadVisualize
BU of 6w8k by Molmil
Co-crystal structures of CHIKV nsP3 macrodomain with pyrimidone fragments
Descriptor: 5,6-dimethyl-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid, Nonstructural polyprotein
Authors:Zhang, S, Garzan, A, Augelli-Szafran, C.E, Pathak, A.K, Wu, M.
Deposit date:2020-03-20
Release date:2021-01-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pyrimidone inhibitors targeting Chikungunya Virus nsP3 macrodomain by fragment-based drug design.
Plos One, 16, 2021
6VLG
DownloadVisualize
BU of 6vlg by Molmil
Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 bound to GDP
Descriptor: Alpha-(1,6)-fucosyltransferase, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION, ...
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
6VXR
DownloadVisualize
BU of 6vxr by Molmil
Structure of Maternal embryonic leucine zipper kinase bound to LDSM276
Descriptor: (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5,8-di(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one, 1,2-ETHANEDIOL, Maternal embryonic leucine zipper kinase
Authors:Counago, R.M, Takarada, J.E, dos Reis, C.V, Gama, F.H, Azevedo, H, Mascarello, A, Guimaraes, C.R, Structural Genomics Consortium (SGC)
Deposit date:2020-02-24
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Maternal embryonic leucine zipper kinase bound to LDSM276
To Be Published
6OZY
DownloadVisualize
BU of 6ozy by Molmil
Wild type GapR crystal structure 2 from C. crescentus
Descriptor: CADMIUM ION, UPF0335 protein CC_3319
Authors:Tarry, M, Harmel, C, Taylor, J.A, Marczynski, G.T, Schmeing, T.M.
Deposit date:2019-05-16
Release date:2019-11-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.014 Å)
Cite:Structures of GapR reveal a central channel which could accommodate B-DNA.
Sci Rep, 9, 2019
8UBH
DownloadVisualize
BU of 8ubh by Molmil
Solution NMR structure of KaiB variant from Thermosynechococcus elongatus vestitus (KaiBTV-4)
Descriptor: Circadian oscillation regulator
Authors:Ojoawo, A, Wayment-Steele, H.K, Kern, D.
Deposit date:2023-09-23
Release date:2023-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Predicting multiple conformations via sequence clustering and AlphaFold2.
Nature, 625, 2024
4QY7
DownloadVisualize
BU of 4qy7 by Molmil
Crystal structure of a yobA protein (BSU18810) from Bacillus subtilis subsp. subtilis str. 168 at 1.55 A resolution
Descriptor: NONAETHYLENE GLYCOL, Uncharacterized protein YobA
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2014-07-23
Release date:2014-08-20
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of a hypothetical protein (yobA) from Bacillus subtilis subsp. subtilis str. 168 at 1.55 A resolution
To be published
7AV1
DownloadVisualize
BU of 7av1 by Molmil
LTA4 hydrolase in complex with fragment2
Descriptor: 2-[5-(4-methoxyphenyl)-1,2,3,4-tetrazol-2-yl]ethanamine, ACETATE ION, IMIDAZOLE, ...
Authors:Srinivas, H.
Deposit date:2020-11-03
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Discovery of LYS006, a Potent and Highly Selective Inhibitor of Leukotriene A 4 Hydrolase.
J.Med.Chem., 64, 2021
7AM5
DownloadVisualize
BU of 7am5 by Molmil
Crystal structure of Peptiligase mutant - L217H/M222P/A225N
Descriptor: SODIUM ION, Subtilisin BPN'
Authors:Rozeboom, H.J, Janssen, D.J.
Deposit date:2020-10-08
Release date:2021-02-17
Last modified:2021-03-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
7AW2
DownloadVisualize
BU of 7aw2 by Molmil
MerTK kinase domain with type 1.5 inhibitor from a DNA-encoded library
Descriptor: 5-(2'-chloro-[1,1'-biphenyl]-4-yl)-N-(imidazo[1,2-a]pyridin-6-ylmethyl)-N-methyl-1,3,4-oxadiazol-2-amine, Tyrosine-protein kinase Mer
Authors:Schimpl, M, Nissink, J.W.M, Blackett, C, Goldberg, K, Hennessy, E.J, Hardaker, E, McCoull, W, McMurray, L, Collingwood, O, Overman, R, Pflug, A, Preston, M, Rawlins, P, Rivers, E, Smith, P, Underwood, E, Truman, C, Warwicker, J, Winter, J, Woodcock, S.
Deposit date:2020-11-06
Release date:2021-03-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Generating Selective Leads for Mer Kinase Inhibitors-Example of a Comprehensive Lead-Generation Strategy.
J.Med.Chem., 64, 2021

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon