Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1XS0
DownloadVisualize
BU of 1xs0 by Molmil
Structure of the E. coli Ivy protein
Descriptor: Inhibitor of vertebrate lysozyme
Authors:Abergel, C, Monchois, V, Byrn, D, Lazzaroni, J.C, Claverie, J.M.
Deposit date:2004-10-18
Release date:2004-11-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 104, 2007
1C7J
DownloadVisualize
BU of 1c7j by Molmil
PNB ESTERASE 56C8
Descriptor: POTASSIUM ION, PROTEIN (PARA-NITROBENZYL ESTERASE), SULFATE ION
Authors:Spiller, B, Gershenson, A, Arnold, F, Stevens, R.C.
Deposit date:2000-02-21
Release date:2000-03-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A structural view of evolutionary divergence.
Proc.Natl.Acad.Sci.USA, 96, 1999
1FW3
DownloadVisualize
BU of 1fw3 by Molmil
OUTER MEMBRANE PHOSPHOLIPASE A FROM ESCHERICHIA COLI
Descriptor: OUTER MEMBRANE PHOSPHOLIPASE A
Authors:Snijder, H.J, Kingma, R.L, Kalk, K.H, Dekker, N, Egmond, M.R, Dijkstra, B.W.
Deposit date:2000-09-21
Release date:2001-06-01
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural investigations of calcium binding and its role in activity and activation of outer membrane phospholipase A from Escherichia coli.
J.Mol.Biol., 309, 2001
1JCS
DownloadVisualize
BU of 1jcs by Molmil
CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH THE PEPTIDE SUBSTRATE TKCVFM AND AN ANALOG OF FARNESYL DIPHOSPHATE
Descriptor: ACETIC ACID, PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT, ...
Authors:Long, S.B, Casey, P.J, Beese, L.S.
Deposit date:2001-06-11
Release date:2001-11-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of human protein farnesyltransferase reveals the basis for inhibition by CaaX tetrapeptides and their mimetics.
Proc.Natl.Acad.Sci.USA, 98, 2001
3P0J
DownloadVisualize
BU of 3p0j by Molmil
Leishmania major Tyrosyl-tRNA synthetase in complex with tyrosinol, triclinic crystal form 1
Descriptor: 4-[(2S)-2-amino-3-hydroxypropyl]phenol, SODIUM ION, Tyrosyl-tRNA synthetase
Authors:Larson, E.T, Merritt, E.A, Medical Structural Genomics of Pathogenic Protozoa (MSGPP)
Deposit date:2010-09-28
Release date:2011-03-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The Double-Length Tyrosyl-tRNA Synthetase from the Eukaryote Leishmania major Forms an Intrinsically Asymmetric Pseudo-Dimer.
J.Mol.Biol., 409, 2011
6KHA
DownloadVisualize
BU of 6kha by Molmil
Solution structure of bovine insulin amyloid intermediate-2
Descriptor: Insulin A chain, Insulin B chain
Authors:Ratha, B.N, Kar, R.K, Brender, J.B, Bhunia, A.
Deposit date:2019-07-14
Release date:2020-08-12
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:High-resolution structure of a partially folded insulin aggregation intermediate.
Proteins, 88, 2020
1BX6
DownloadVisualize
BU of 1bx6 by Molmil
CRYSTAL STRUCTURE OF THE POTENT NATURAL PRODUCT INHIBITOR BALANOL IN COMPLEX WITH THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE
Descriptor: BALANOL, CAMP-DEPENDENT PROTEIN KINASE
Authors:Narayana, N, Xuong, N.-H, Ten Eyck, L.F, Taylor, S.S.
Deposit date:1998-10-13
Release date:1999-04-27
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the potent natural product inhibitor balanol in complex with the catalytic subunit of cAMP-dependent protein kinase.
Biochemistry, 38, 1999
4QYE
DownloadVisualize
BU of 4qye by Molmil
CHK1 kinase domain in complex with diarylpyrazine compound 1
Descriptor: 4-[6-(3-hydroxyphenyl)pyrazin-2-yl]benzoic acid, Serine/threonine-protein kinase Chk1
Authors:Appleton, B, Wu, P.
Deposit date:2014-07-24
Release date:2014-12-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of the 1,7-diazacarbazole class of inhibitors of checkpoint kinase 1.
Bioorg.Med.Chem.Lett., 24, 2014
1QZC
DownloadVisualize
BU of 1qzc by Molmil
Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S12
Authors:Valle, M, Zavialov, A, Li, W, Stagg, S.M, Sengupta, J, Nielsen, R.C, Nissen, P, Harvey, S.C, Ehrenberg, M, Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
4J9E
DownloadVisualize
BU of 4j9e by Molmil
Crystal structure of the N114A mutant of the Abl-SH3 domain complexed with the high affinity peptide P17
Descriptor: P17, SULFATE ION, Tyrosine-protein kinase ABL1
Authors:Camara-Artigas, A.
Deposit date:2013-02-16
Release date:2014-01-29
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the N114A mutant of the Abl-SH3 domain complexed with the high affinity peptide P17
To be Published
1DPT
DownloadVisualize
BU of 1dpt by Molmil
D-DOPACHROME TAUTOMERASE
Descriptor: D-DOPACHROME TAUTOMERASE
Authors:Sugimoto, H, Taniguchi, M, Nakagawa, A, Tanaka, I.
Deposit date:1998-05-11
Release date:1999-03-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution.
Biochemistry, 38, 1999
4CV9
DownloadVisualize
BU of 4cv9 by Molmil
MPS1 kinase with 3-aminopyridin-2-one inhibitors
Descriptor: 1,2-ETHANEDIOL, 4-(4-Methylpiperazin-1-yl)-N-(2-oxo-5-(pyridin-4-yl)-1,2-dihydropyridin-3-yl)benzamide, DIMETHYL SULFOXIDE, ...
Authors:Fearon, D, Bavetsias, V, Bayliss, R, Schmitt, J, Westwood, I.M, vanMontfort, R.L.M, Jones, K.
Deposit date:2014-03-24
Release date:2015-04-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protein Kinase Selectivity of a 3-Aminopyridin-2- One Based Fragment Library, Identification of 3-Amino-5-(Pyridin-4-Yl)Pyridin-2(1H)-One as a Novel Scaffold for Mps1 Inhibition
To be Published
1GGN
DownloadVisualize
BU of 1ggn by Molmil
Structures of glycogen phosphorylase-inhibitor complexes and the implications for structure-based drug design
Descriptor: BETA-D-GLUCOPYRANOSE SPIROHYDANTOIN, PROTEIN (GLYCOGEN PHOSPHORYLASE), PYRIDOXAL-5'-PHOSPHATE
Authors:Watson, K.A, Tsitsanou, K.E, Gregoriou, M, Zographos, S.E, Skamnaki, V.T, Oikonomakos, N.G, Fleet, G.W, Johnson, L.N.
Deposit date:2000-08-29
Release date:2000-09-13
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Kinetic and crystallographic studies of glucopyranosylidene spirothiohydantoin binding to glycogen phosphorylase B.
Bioorg.Med.Chem., 10, 2002
4CZS
DownloadVisualize
BU of 4czs by Molmil
Discovery of Glycomimetic Ligands via Genetically-encoded Library of Phage displaying Mannose-peptides
Descriptor: 2-hydroxyethyl alpha-D-mannopyranoside, CALCIUM ION, Concanavalin V, ...
Authors:Ng, S, Lin, E, Tjhung, K.F, Gerlits, O, Sood, A, Kasper, B, Deng, L, Kitov, P.I, Matochko, W.L, Paschal, B.M, Noren, C.J, Klassen, J, Mahal, L.K, Coates, L, Woods, R.J, Derda, R.
Deposit date:2014-04-22
Release date:2015-04-22
Last modified:2022-12-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Genetically-Encoded Fragment-Based Discovery of Glycopeptide Ligands for Carbohydrate-Binding Proteins.
J.Am.Chem.Soc., 137, 2015
1YJI
DownloadVisualize
BU of 1yji by Molmil
RDC-refined Solution NMR structure of reduced putidaredoxin
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Putidaredoxin
Authors:Jain, N.U, Tjioe, E, Savidor, A, Boulie, J.
Deposit date:2005-01-14
Release date:2005-06-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings.
Biochemistry, 44, 2005
1FW2
DownloadVisualize
BU of 1fw2 by Molmil
OUTER MEMBRANE PHOSPHOLIPASE A FROM ESCHERICHIA COLI
Descriptor: CALCIUM ION, OUTER MEMBRANE PHOSPHOLIPASE A
Authors:Snijder, H.J, Kingma, R.L, Kalk, K.H, Dekker, N, Egmond, M.R, Dijkstra, B.W.
Deposit date:2000-09-21
Release date:2001-06-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural investigations of calcium binding and its role in activity and activation of outer membrane phospholipase A from Escherichia coli.
J.Mol.Biol., 309, 2001
3K6P
DownloadVisualize
BU of 3k6p by Molmil
Estrogen Related Receptor alpha in Complex with an Ether Based Ligand
Descriptor: 4-(4-{[(5R)-2,4-dioxo-1,3-thiazolidin-5-yl]methyl}-2-methoxyphenoxy)-3-(trifluoromethyl)benzonitrile, Steroid hormone receptor ERR1
Authors:Abad, M.C, Patch, R.J.
Deposit date:2009-10-09
Release date:2010-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Development of Diaryl Ether based ligands for Estrogen Related Receptor alpha as Potential Anti-Diabetic Agents.
To be Published
4E05
DownloadVisualize
BU of 4e05 by Molmil
Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Salivary anti-thrombin peptide anophelin, ...
Authors:Figueiredo, A.C, de Sanctis, D, Gutierrez-Gallego, R, Cereija, T.B, Macedo-Ribeiro, S, Fuentes-Prior, P, Pereira, P.J.B.
Deposit date:2012-03-02
Release date:2012-12-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.
Proc.Natl.Acad.Sci.USA, 109, 2012
4LUL
DownloadVisualize
BU of 4lul by Molmil
The crystal structure of the P132A, Y133D mutant of Pyrococcus furiosus phosphoglucose isomerase in complex with manganese.
Descriptor: Glucose-6-phosphate isomerase, MANGANESE (II) ION
Authors:Baker, P.J, Almourfi, F.M.
Deposit date:2013-07-25
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Correlated mutation analysis as a tool for smart library design to improve protein performance.
To be Published
5U4X
DownloadVisualize
BU of 5u4x by Molmil
Coactivator-associated arginine methyltransferase 1 with TP-064
Descriptor: Histone-arginine methyltransferase CARM1, N-methyl-N-[(2-{1-[2-(methylamino)ethyl]piperidin-4-yl}pyridin-4-yl)methyl]-3-phenoxybenzamide, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:DONG, A, ZENG, H, Saikatendu, K.S, STONE, H, WALKER, J.R, Seitova, A, Hutchinson, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, BROWN, P.J, WU, H, Structural Genomics Consortium (SGC)
Deposit date:2016-12-06
Release date:2016-12-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:TP-064, a potent and selective small molecule inhibitor of PRMT4 for multiple myeloma.
Oncotarget, 9, 2018
4E06
DownloadVisualize
BU of 4e06 by Molmil
Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Salivary anti-thrombin peptide anophelin, ...
Authors:Figueiredo, A.C, de Sanctis, D, Gutierrez-Gallego, R, Cereija, T.B, Macedo-Ribeiro, S, Fuentes-Prior, P, Pereira, P.J.B.
Deposit date:2012-03-02
Release date:2012-12-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.196 Å)
Cite:Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.
Proc.Natl.Acad.Sci.USA, 109, 2012
3KDS
DownloadVisualize
BU of 3kds by Molmil
apo-FtsH crystal structure
Descriptor: Cell division protein FtsH, N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4-methylpentanoyl}-3-naphthalen-2-yl-L-alanyl-L-alaninamide, ZINC ION
Authors:Bieniossek, C, Niederhauser, B, Baumann, U.
Deposit date:2009-10-23
Release date:2009-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:The crystal structure of apo-FtsH reveals domain movements necessary for substrate unfolding and translocation
Proc.Natl.Acad.Sci.USA, 106, 2009
4LSS
DownloadVisualize
BU of 4lss by Molmil
Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEAVY CHAIN OF ANTIBODY VRC01, ...
Authors:Zhou, T, Moquin, S, Kwong, P.D.
Deposit date:2013-07-23
Release date:2013-08-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Multidonor Analysis Reveals Structural Elements, Genetic Determinants, and Maturation Pathway for HIV-1 Neutralization by VRC01-Class Antibodies.
Immunity, 39, 2013
4LUK
DownloadVisualize
BU of 4luk by Molmil
The crystal structure of the P132A, Y133G mutant of Pyrococcus furiosus phosphoglucose isomerase in complex with manganese and 5-phospho-D-arabinonate.
Descriptor: 1,2-ETHANEDIOL, 5-PHOSPHOARABINONIC ACID, Glucose-6-phosphate isomerase, ...
Authors:Baker, P.J, Almourfi, F.M.
Deposit date:2013-07-25
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Correlated mutation analysis as a tool for smart library design to improve protein performance.
To be Published
3GV3
DownloadVisualize
BU of 3gv3 by Molmil
CXCL12 (SDF) in trigonal space group
Descriptor: CXCL12 protein
Authors:Murphy, J.W, Crichlow, G, Lolis, E.
Deposit date:2009-03-30
Release date:2010-01-26
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Heterologous quaternary structure of CXCL12 and its relationship to the CC chemokine family.
Proteins, 78, 2009

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon