PDB: 73420 resultsInfo pagesStatus searchChemie searchBIRD

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6OVY	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1C Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*G)-3'), DNA (5'-D(P*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*CP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.999 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
7M12	TVV2 capsid protein Descriptor: Capsid protein Authors: Zhou, H.Z, Stevens, A.W, Cui, Y.X, Muratore, K.A, Johnson, P.J. Deposit date: 2021-03-12 Release date: 2021-04-07 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2. Mbio, 12, 2021
6OVR	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1G Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*GP*GP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*GP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.843 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY5	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min Descriptor: DNA (5'-D(*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*CP*TP*CP*TP*GP*AP*TP*GP*CP*AP*G)-3'), DNA (5'-D(P*CP*CP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OW3	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1T Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*TP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-09 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.766 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY6	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.096 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
5D08	Crystal structure of selenomethionine-labeled epoxyqueuosine reductase Descriptor: CHLORIDE ION, COBALAMIN, Epoxyqueuosine reductase, ... Authors: Dowling, D.P, Miles, Z.D, Kohrer, C, Bandarian, V, Drennan, C.L. Deposit date: 2015-08-02 Release date: 2016-09-28 Last modified: 2019-11-20 Method: X-RAY DIFFRACTION (1.747 Å) Cite: Molecular basis of cobalamin-dependent RNA modification. Nucleic Acids Res., 44, 2016
8JCE	Cryo-EM Structure of Chikungunya Virus Nonstructural Protein 1 with m7GpppAmU Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ... Authors: Zhang, K, Law, M.C.Y, Nguyen, T.M, Tan, Y.B, Wirawan, M, Law, Y.S, Luo, D.H. Deposit date: 2023-05-11 Release date: 2023-11-15 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Chikungunya virus nonstructural protein 1 is a versatile RNA capping and decapping enzyme. J.Biol.Chem., 299, 2023
7LWY	TVV viral capsid protein Descriptor: Capsid protein Authors: Zhou, Z.H, Stevens, A.W, Cui, Y.X, Johnson, P.J, Muratore, K.A. Deposit date: 2021-03-02 Release date: 2021-04-07 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2. Mbio, 12, 2021
2CBN	Crystal structure of ZipD from Escherichia coli Descriptor: RIBONUCLEASE Z, ZINC ION Authors: Pohl, E, Meyer-Klaucke, W, Kostelecky, B. Deposit date: 2006-01-06 Release date: 2006-02-15 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The Crystal Structure of the Zinc Phosphodiesterase from Escherichia Coli Provides Insight Into Function and Cooperativity of Trnase Z-Family Proteins. J.Bacteriol., 188, 2006
3CCV	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCL	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model. Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCE	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-25 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCM	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCJ	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCR	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model. Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
3CCU	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482C Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Blaha, G, Gurel, G. Deposit date: 2008-02-26 Release date: 2008-05-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008
8FR8	Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex Descriptor: 16S rRNA (1511-MER), 23S rRNA (3119-MER), 30S ribosomal protein S10, ... Authors: Majumdar, S, Sharma, M.R, Manjari, S.R, Banavali, N.K, Agrawal, R.K. Deposit date: 2023-01-06 Release date: 2023-05-17 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation. Proc.Natl.Acad.Sci.USA, 120, 2023
8HUJ	Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A Descriptor: Eukaryotic initiation factor 4A-I, Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), ... Authors: Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I. Deposit date: 2022-12-24 Release date: 2023-08-02 Last modified: 2023-09-13 Method: ELECTRON MICROSCOPY (3.76 Å) Cite: Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor. Nat Commun, 14, 2023
5AGQ	Solution structure of the TAM domain of human TIP5 BAZ2A involved in epigenetic regulation of rRNA genes Descriptor: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A Authors: Anosova, I, Melnik, S, Tripsianes, K, Kateb, F, Grummt, I, Sattler, M. Deposit date: 2015-02-03 Release date: 2015-05-06 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: A Novel RNA Binding Surface of the Tam Domain of Tip5/Baz2A Mediates Epigenetic Regulation of Rrna Genes. Nucleic Acids Res., 43, 2015
5IVL	CshA Helicase Descriptor: DEAD-box ATP-dependent RNA helicase CshA, SULFATE ION Authors: Huen, J, Lin, C.-L, Yi, W.-L, Li, C.-L, Yuan, H. Deposit date: 2016-03-21 Release date: 2017-03-22 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Insights into a Unique Dimeric DEAD-Box Helicase CshA that Promotes RNA Decay. Structure, 25, 2017
8RBZ	Structure of Integrator-PP2A-SOSS-CTD post-termination complex Descriptor: DNA-directed RNA polymerase subunit, DSS1, Integrator complex subunit 1, ... Authors: Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. Deposit date: 2023-12-05 Release date: 2024-02-07 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 629, 2024
7VPG	Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98 Descriptor: Isoform 3 of Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Li, T, Guo, H, Yang, T, Wen, Y, Ji, X. Deposit date: 2021-10-17 Release date: 2022-01-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Molecular Mechanism of SARS-CoVs Orf6 Targeting the Rae1-Nup98 Complex to Compete With mRNA Nuclear Export. Front Mol Biosci, 8, 2021
7VPH	Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98 Descriptor: Isoform 3 of Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Li, T, Guo, H, Yang, T, Wen, Y, Ji, X. Deposit date: 2021-10-17 Release date: 2022-01-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular Mechanism of SARS-CoVs Orf6 Targeting the Rae1-Nup98 Complex to Compete With mRNA Nuclear Export. Front Mol Biosci, 8, 2021
2ZHB	Complex structure of AFCCA with tRNAminiDUC Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (34-MER) Authors: Toh, Y, Tomita, K. Deposit date: 2008-02-01 Release date: 2008-08-05 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme Embo J., 27, 2008

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