6OW3
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1T
Summary for 6OW3
| Entry DOI | 10.2210/pdb6ow3/pdb |
| Descriptor | DNA-directed RNA polymerase subunit alpha, PYROPHOSPHATE 2-, ZINC ION, ... (11 entities in total) |
| Functional Keywords | rna polymerase, pyrg, reiterative transcription, transcription-dna-rna complex, transcription/dna/rna |
| Biological source | Thermus thermophilus More |
| Total number of polymer chains | 9 |
| Total formula weight | 443630.59 |
| Authors | Shin, Y.,Murakami, K.S. (deposition date: 2019-05-09, release date: 2019-07-24, Last modification date: 2023-10-11) |
| Primary citation | Shin, Y.,Hedglin, M.,Murakami, K.S. Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48:2144-2155, 2020 Cited by PubMed Abstract: Reiterative transcription is a non-canonical form of RNA synthesis by RNA polymerase in which a ribonucleotide specified by a single base in the DNA template is repetitively added to the nascent RNA transcript. We previously determined the X-ray crystal structure of the bacterial RNA polymerase engaged in reiterative transcription from the pyrG promoter, which contains eight poly-G RNA bases synthesized using three C bases in the DNA as a template and extends RNA without displacement of the promoter recognition σ factor from the core enzyme. In this study, we determined a series of transcript initiation complex structures from the pyrG promoter using soak-trigger-freeze X-ray crystallography. We also performed biochemical assays to monitor template DNA translocation during RNA synthesis from the pyrG promoter and in vitro transcription assays to determine the length of poly-G RNA from the pyrG promoter variants. Our study revealed how RNA slips on template DNA and how RNA polymerase and template DNA determine length of reiterative RNA product. Lastly, we determined a structure of a transcript initiation complex at the pyrBI promoter and proposed an alternative mechanism of RNA slippage and extension requiring the σ dissociation from the core enzyme. PubMed: 31965171DOI: 10.1093/nar/gkz1221 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.766 Å) |
Structure validation
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