PDB: 1577 resultsInfo pagesStatus searchChemie searchBIRD

---

4XOL	Observing the overall rocking motion of a protein in a crystal - Cubic Ubiquitin crystals. Descriptor: Ubiquitin, ZINC ION Authors: Coquelle, N, Peixiang, M, Schanda, P, Colletier, J.P. Deposit date: 2015-01-16 Release date: 2015-10-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Observing the overall rocking motion of a protein in a crystal. Nat Commun, 6, 2015
4XOF	Observing the overall rocking motion of a protein in a crystal - Orthorhombic Ubiquitin crystals without Zinc. Descriptor: Ubiquitin Authors: Coquelle, N, Ma, P, Schanda, P, Colletier, J.P. Deposit date: 2015-01-16 Release date: 2015-10-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Observing the overall rocking motion of a protein in a crystal. Nat Commun, 6, 2015
4WZP	Ser65 phosphorylated ubiquitin, major conformation Descriptor: SULFATE ION, ubiquitin Authors: Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D. Deposit date: 2014-11-20 Release date: 2015-01-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis. Embo J., 34, 2015
4ZPZ	Crystal Structure of Semi-synthetic Ubiquitin with Phospho-Ser65 and Ala46Cys Descriptor: Polyubiquitin-B Authors: Han, C, Virdee, S. Deposit date: 2015-05-08 Release date: 2015-06-10 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.54 Å) Cite: A Versatile Strategy for the Semisynthetic Production of Ser65 Phosphorylated Ubiquitin and Its Biochemical and Structural Characterisation. Chembiochem, 16, 2015
4ZQS	New compact conformation of linear Ub2 structure Descriptor: ubiquitin Authors: Thach, T.T, Shin, D, Han, S, Lee, S. Deposit date: 2015-05-11 Release date: 2016-04-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.804 Å) Cite: New conformations of linear polyubiquitin chains from crystallographic and solution-scattering studies expand the conformational space of polyubiquitin. Acta Crystallogr D Struct Biol, 72, 2016
4Z9S	Non-covalent assembly of monoubiquitin that mimics K11 poly-ubiquitin Descriptor: MALONIC ACID, THIOCYANATE ION, Ubiquitin-40S ribosomal protein S27a Authors: Levin-Kravets, O, Prag, G. Deposit date: 2015-04-11 Release date: 2015-07-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Tetrameric Assembly of Monoubiquitin Accurately Mimics the Lys11 Polyubiquitin Chain Structure. Biochemistry, 54, 2015
4XKL	Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin Descriptor: ACETATE ION, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ... Authors: Xie, X, Li, F, Wang, Y, Lin, Z, Chen, X, Liu, J, Pan, L. Deposit date: 2015-01-12 Release date: 2015-11-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2 Autophagy, 11, 2015
3A9J	Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
3ALB	Cyclic Lys48-linked tetraubiquitin Descriptor: SULFATE ION, ubiquitin Authors: Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. Deposit date: 2010-07-29 Release date: 2010-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
3B1L	Crystal Structure of parkin ubiquitin-like domain R33Q mutant Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T. Deposit date: 2011-07-04 Release date: 2012-07-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of parkin ubiquitin-like domain R33Q mutant to be published
3AUL	Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation Descriptor: Polyubiquitin-C Authors: Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. Deposit date: 2011-02-09 Release date: 2011-09-07 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
3B08	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
3A9K	Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
3B0A	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
3AXC	Crystal structure of linear diubiquitin Descriptor: GLYCEROL, Ubiquitin Authors: Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S. Deposit date: 2011-04-01 Release date: 2012-01-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a compact conformation of linear diubiquitin Acta Crystallogr.,Sect.D, 68, 2012
4HK2	U7Ub25.2540 Descriptor: SULFATE ION, Ubiquitin Authors: Murray, J.M, Rouge, L. Deposit date: 2012-10-14 Release date: 2012-11-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4HJK	U7Ub7 Disulfide variant Descriptor: PHOSPHATE ION, Ubiquitin Authors: Murray, J.M, Rouge, L. Deposit date: 2012-10-12 Release date: 2012-11-21 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.784 Å) Cite: Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4GOC	Crystal structure of the Get5 ubiquitin-like domain Descriptor: Golgi to ER traffic protein 5 Authors: Chartron, J.W, VanderVelde, D.G, Clemons Jr, W.M. Deposit date: 2012-08-19 Release date: 2012-11-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface. Cell Rep, 2, 2012
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
4GSW	Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom Descriptor: SULFATE ION, Ubiquitin Authors: Bosch, D.E, Siderovski, D.P. Deposit date: 2012-08-28 Release date: 2012-12-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013

<12345678910111213141516>