Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin

Summary for 4XKL

DescriptorUbiquitin, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ... (6 entities in total)
Functional Keywordsndp52, ubiquitin, zinc finger, autophagy receptor, complex, protein binding-metal binding protein complex, protein binding/metal binding protein
Biological sourceHomo sapiens (Human)
Cellular locationUbiquitin: Cytoplasm . 60S ribosomal protein L40: Cytoplasm  P62987
Cytoplasm, perinuclear region  Q13137
Total number of polymer chains4
Total molecular weight26076.52
Xie, X.,Li, F.,Wang, Y.,Lin, Z.,Chen, X.,Liu, J.,Pan, L. (deposition date: 2015-01-12, release date: 2015-11-11)
Primary citation
Xie, X.,Li, F.,Wang, Y.,Wang, Y.,Lin, Z.,Cheng, X.,Liu, J.,Chen, C.,Pan, L.
Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2
Autophagy, 11:1775-1789, 2015
PubMed: 26506893 (PDB entries with the same primary citation)
DOI: 10.1080/15548627.2015.1082025
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.252904.6%0.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report