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4XKL

Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
Ubiquitinpolymer808875.12UniProt (P62987)
Pfam (PF00240)
Homo sapiens (Human)
2B, D
(B, D)
Calcium-binding and coiled-coil domain-containing protein 2polymer333887.52UniProt (Q13137)Homo sapiens (Human)Antigen nuclear dot 52 kDa protein,Nuclear domain 10 protein NDP52,Nuclear domain 10 protein 52,Nuclear dot protein 52
3E, I
(A, C)
GLYCEROLnon-polymer92.12Chemie (GOL)
4F, G, J, K
(B, C, D)
ACETATE IONnon-polymer59.04Chemie (ACT)
5H, L
(B, D)
ZINC IONnon-polymer65.42Chemie (ZN)
6M, N, O, P
(A, B, C, D)
waterwater18.0106Chemie (HOH)
Sequence modifications
A, C: 1 - 76 (UniProt: P62987)
PDBExternal DatabaseDetails
Gly -3-expression tag
Pro -2-expression tag
Gly -1-expression tag
Ser 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight25525.3
Non-Polymers*Number of molecules8
Total formula weight551.2
All*Total formula weight26076.5
*Water molecules are not included.

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PDB entries from 2025-06-18

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