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PDB: 19 results

5YLT
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BU of 5ylt by Molmil
Crystal structure of SET7/9 in complex with a cyproheptadine derivative
Descriptor: 2-(1-methylpiperidin-4-ylidene)tricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3(8),4,6,9,12,14-heptaen-6-ol, GLYCEROL, Histone-lysine N-methyltransferase SETD7, ...
Authors:Hirano, T, Fujiwara, T, Niwa, H, Hirano, M, Ohira, K, Okazaki, Y, Sato, S, Umehara, T, Maemoto, Y, Ito, A, Yoshida, M, Kagechika, H.
Deposit date:2017-10-19
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Development of Novel Inhibitors for Histone Methyltransferase SET7/9 based on Cyproheptadine.
ChemMedChem, 13, 2018
3AUL
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BU of 3aul by Molmil
Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation
Descriptor: Polyubiquitin-C
Authors:Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K.
Deposit date:2011-02-09
Release date:2011-09-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Conformational dynamics of wild-type Lys48-linked diubiquitin in solution
J.Biol.Chem., 286, 2011
2DGE
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BU of 2dge by Molmil
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
Descriptor: Cytochrome c6, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION
Authors:Chida, H, Yokoyama, T, Kawai, F, Nakazawa, A, Akazaki, H, Takayama, Y, Hirano, T, Suruga, K, Satoh, T, Yamada, S, Kawachi, R, Unzai, S, Nishio, T, Park, S.-Y, Oku, T.
Deposit date:2006-03-11
Release date:2006-07-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett., 580, 2006
1ISG
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BU of 1isg by Molmil
Crystal Structure Analysis of BST-1/CD157 with ATPgammaS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISM
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BU of 1ism by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICOTINAMIDE, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISH
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BU of 1ish by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNADP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ETHENO-NADP, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISF
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BU of 1isf by Molmil
Crystal Structure Analysis of BST-1/CD157
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISJ
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BU of 1isj by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with NMN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISI
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BU of 1isi by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNAD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICOTINAMIDE, [[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-imidazo[2,1-f]purin-6-ium-3-yl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-3,4-dihydroxy-5-oxidanidyl-oxolan-2-yl]methyl phosphate, ...
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
3DMI
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BU of 3dmi by Molmil
Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution
Descriptor: HEME C, MAGNESIUM ION, cytochrome c6
Authors:Akazaki, H, Kawai, F, Hosokawa, M, Hama, T, Hirano, T, Lim, B.-K, Sakurai, N, Hakamata, W, Park, S.-Y, Nishio, T, Oku, T.
Deposit date:2008-07-01
Release date:2009-03-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution.
Biosci.Biotechnol.Biochem., 73, 2009
5H69
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BU of 5h69 by Molmil
Crystal structure of an asymmetric dimer of the Geobacillus stearothermophilus SMC hinge domain
Descriptor: Chromosome partition protein Smc
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2004 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H66
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BU of 5h66 by Molmil
Crystal structure of the Bacillus subtilis SMC head domain complexed with the cognate ScpA C-terminal domain
Descriptor: Chromosome partition protein Smc, Segregation and condensation protein A
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82194769 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H67
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BU of 5h67 by Molmil
Crystal structure of the Bacillus subtilis SMC head domain complexed with the cognate ScpA C-terminal domain and soaked ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chromosome partition protein Smc, Segregation and condensation protein A
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.072035 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H68
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BU of 5h68 by Molmil
Crystal structure of an engaged dimer of the Geobacillus stearothermophilus SMC head domain
Descriptor: Chromosome partition protein Smc, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
3VUZ
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BU of 3vuz by Molmil
Crystal structure of histone methyltransferase SET7/9 in complex with AAM-1
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl](hexyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase SETD7
Authors:Niwa, H, Handa, N, Tomabechi, Y, Honda, K, Toyama, M, Ohsawa, N, Shirouzu, M, Kagechika, H, Hirano, T, Umehara, T, Yokoyama, S.
Deposit date:2012-07-10
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives
Acta Crystallogr.,Sect.D, 69, 2013
3VV0
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BU of 3vv0 by Molmil
Crystal structure of histone methyltransferase SET7/9 in complex with DAAM-3
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase SETD7
Authors:Niwa, H, Handa, N, Tomabechi, Y, Honda, K, Toyama, M, Ohsawa, N, Shirouzu, M, Kagechika, H, Hirano, T, Umehara, T, Yokoyama, S.
Deposit date:2012-07-10
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives
Acta Crystallogr.,Sect.D, 69, 2013
3WX7
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BU of 3wx7 by Molmil
Crystal structure of COD
Descriptor: ACETATE ION, CALCIUM ION, Chitin oligosaccharide deacetylase, ...
Authors:Park, S.-Y, Sugiyama, K, Hirano, T, Nishio, T.
Deposit date:2014-07-18
Release date:2014-12-03
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (1.349 Å)
Cite:Structure-based analysis of domain function of chitin oligosaccharide deacetylase from Vibrio parahaemolyticus.
FEBS Lett., 589, 2015
3W6J
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BU of 3w6j by Molmil
Crystal structure of ScpAB core complex
Descriptor: ScpA, ScpB
Authors:Kamada, K, Hirano, T.
Deposit date:2013-02-15
Release date:2013-04-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB
Structure, 21, 2013
3W6K
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BU of 3w6k by Molmil
Crystal structure of dimer of ScpB N-terminal domain complexed with ScpA peptide
Descriptor: ScpA, ScpB
Authors:Kamada, K, Hirano, T.
Deposit date:2013-02-15
Release date:2013-04-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.374 Å)
Cite:Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB
Structure, 21, 2013

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