Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1USP
DownloadVisualize
BU of 1usp by Molmil
Organic Hydroperoxide Resistance Protein from Deinococcus radiodurans
Descriptor: GLYCEROL, ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN
Authors:Meunier-Jamin, C, Kapp, U, Leonard, G, McSweeney, S.
Deposit date:2003-11-27
Release date:2004-04-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure of the Organic Hydroperoxide Resistance Protein from Deinococcus Radiodurans: Do Conformational Changes Facilitate Recycling of the Redox Disulfide?
J.Biol.Chem., 279, 2004
8ZRE
DownloadVisualize
BU of 8zre by Molmil
HBcAg-D4 Fab complex
Descriptor: Capsid protein, Heavy chains of D4 Fab, Light chains of D4 Fab
Authors:Liu, C, Yan, H, Ju, B.
Deposit date:2024-06-04
Release date:2024-11-13
Last modified:2025-02-19
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:The characterization and structural basis of a human broadly binding antibody to HBV core protein.
J.Virol., 99, 2025
6SFB
DownloadVisualize
BU of 6sfb by Molmil
EED in complex with a triazolopyrimidine
Descriptor: GLYCEROL, N-(2,3-dihydro-1-benzofuran-4-ylmethyl)-8-(4-methylsulfonylphenyl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine, Polycomb protein EED
Authors:Read, J.A.
Deposit date:2019-08-01
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Rapid Identification of Novel Allosteric PRC2 Inhibitors.
Acs Chem.Biol., 14, 2019
8TWU
DownloadVisualize
BU of 8twu by Molmil
Crystal structure of Cytochrome P450 AspB bound to N1-methylated cyclo-L-Trp-L-Pro
Descriptor: (3S,5S,8aS)-3-[(1-methyl-1H-indol-3-yl)methyl]hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, Cytochrome P450 AspB, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gering, H.E, Li, X, Tang, H, Swartz, P.D, Chang, W.-C, Makris, T.M.
Deposit date:2023-08-21
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:A Ferric-Superoxide Intermediate Initiates P450-Catalyzed Cyclic Dipeptide Dimerization.
J.Am.Chem.Soc., 145, 2023
8A7E
DownloadVisualize
BU of 8a7e by Molmil
PAPP-A dimer in complex with its inhibitor STC2
Descriptor: CALCIUM ION, Pappalysin-1, Stanniocalcin-2, ...
Authors:Kobbero, S.D, Gajhede, M, Mirza, O.A, Boesen, T, Oxvig, C.
Deposit date:2022-06-20
Release date:2022-11-02
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (5.02 Å)
Cite:Structure of the proteolytic enzyme PAPP-A with the endogenous inhibitor stanniocalcin-2 reveals its inhibitory mechanism.
Nat Commun, 13, 2022
1UNG
DownloadVisualize
BU of 1ung by Molmil
Structural mechanism for the inhibition of CDK5-p25 by roscovitine, aloisine and indirubin.
Descriptor: 6-PHENYL[5H]PYRROLO[2,3-B]PYRAZINE, CELL DIVISION PROTEIN KINASE 5, CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1
Authors:Mapelli, M, Crovace, C, Massimiliano, L, Musacchio, A.
Deposit date:2003-09-10
Release date:2004-11-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of Cdk5/P25 Binding by Cdk Inhibitors
J.Med.Chem., 48, 2005
4QY8
DownloadVisualize
BU of 4qy8 by Molmil
Crystal Structure of anti-MSP2 Fv fragment (mAb6D8) in complex with 3D7-MSP2 14-30
Descriptor: Fv fragment(mAb6D8) heavy chain, Fv fragment(mAb6D8) light chain, Merozoite surface antigen 2
Authors:Morales, R.A.V, MacRaild, C.A, Seow, J, Bankala, K, Drinkwater, N, McGowan, S, Rouet, R, Christ, D, Anders, R.F, Norton, R.S.
Deposit date:2014-07-24
Release date:2015-06-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.353 Å)
Cite:Structural basis for epitope masking and strain specificity of a conserved epitope in an intrinsically disordered malaria vaccine candidate.
Sci Rep, 5, 2015
7MWL
DownloadVisualize
BU of 7mwl by Molmil
The TAM domain of BAZ2A in complex with a 12mer mCG DNA
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3'), GLYCEROL
Authors:Liu, K, Dong, A, Li, Y, Loppnau, P, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2021-05-17
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:The TAM domain of BAZ2A in complex with a 12mer mCG DNA
To Be Published
7JS3
DownloadVisualize
BU of 7js3 by Molmil
Structure of the Class II Fructose-1,6-Bisphophatase from Francisella tularensis
Descriptor: Fructose-1,6-bisphosphatase, GLYCEROL, MAGNESIUM ION
Authors:Abad-Zapatero, C, Wolf, N.M, Movahedzadeh, F, Gutka, H, Selezneva, A.
Deposit date:2020-08-13
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and biochemical characterization of the class II fructose-1,6-bisphosphatase from Francisella tularensis.
Acta Crystallogr.,Sect.F, 76, 2020
8QHI
DownloadVisualize
BU of 8qhi by Molmil
NMR solution structure of the golden kiwi fruit allergen Act c 8.0101
Descriptor: Major allergen Pru ar like
Authors:Zeindl, R, Tollinger, M.
Deposit date:2023-09-08
Release date:2023-11-08
Method:SOLUTION NMR
Cite:NMR resonance assignments of the PR-10 allergens Act c 8 and Act d 8 from golden and green kiwifruit.
Biomol NMR Assign, 15, 2021
7CNB
DownloadVisualize
BU of 7cnb by Molmil
Crystal structure of Gp16 C-terminal domain from Bacillus virus phi29
Descriptor: DNA packaging protein
Authors:Ouyang, S.Y, Saeed, A.F.U.H.
Deposit date:2020-07-30
Release date:2021-03-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural Insights into gp16 ATPase in the Bacteriophage φ29 DNA Packaging Motor.
Biochemistry, 60, 2021
6Q6H
DownloadVisualize
BU of 6q6h by Molmil
Cryo-EM structure of the APC/C-Cdc20-Cdk2-cyclinA2-Cks2 complex, the D2 box class
Descriptor: Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 13, ...
Authors:Zhang, S, Barford, D.
Deposit date:2018-12-11
Release date:2019-09-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cyclin A2 degradation during the spindle assembly checkpoint requires multiple binding modes to the APC/C.
Nat Commun, 10, 2019
2FY1
DownloadVisualize
BU of 2fy1 by Molmil
A dual mode of RNA recognition by the RBMY protein
Descriptor: RNA-binding motif protein, Y chromosome, family 1 member A1, ...
Authors:Skrisovska, L, Bourgois, C, Stefl, R, Kister, L, Wenter, P, Elliot, D, Stevenin, J, Allain, F.H.T.
Deposit date:2006-02-07
Release date:2007-02-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction.
EMBO Rep., 8, 2007
2WQQ
DownloadVisualize
BU of 2wqq by Molmil
Crystallographic analysis of monomeric CstII
Descriptor: ALPHA-2,3-/2,8-SIALYLTRANSFERASE, CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID, DI(HYDROXYETHYL)ETHER
Authors:Chan, P.H.W, Lairson, L.L, Lee, H.J, Wakarchuk, W.W, Strynadka, N.C.J, Withers, S.G, McIntosh, L.P.
Deposit date:2009-08-25
Release date:2009-10-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:NMR Spectroscopic Characterization of the Sialyltransferase Cstii from Camplyobacter Jejuni: Histidine 188 is the General Base.
Biochemistry, 48, 2009
3G7J
DownloadVisualize
BU of 3g7j by Molmil
Crystal Structure of a Genetically Modified Delta Class GST (adGSTD4-4) from Anopheles dirus, Y119E, in Complex with S-Hexyl Glutathione
Descriptor: Glutathione transferase GST1-4, S-HEXYLGLUTATHIONE
Authors:Wongsantichon, J, Robinson, R.C, Ketterman, A.J.
Deposit date:2009-02-10
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural contributions of delta class glutathione transferase active-site residues to catalysis
Biochem.J., 428, 2010
6S7D
DownloadVisualize
BU of 6s7d by Molmil
Self-complementary duplex DNA containing an internucleoside phosphoroselenolate
Descriptor: BARIUM ION, CHLORIDE ION, DNA (5'-D(*GP*(XCI)P*CP*CP*CP*GP*GP*GP*AP*C)-3'), ...
Authors:Conlon, P.F, Steinhogl, J, Vyle, J.S, Hall, J.P.
Deposit date:2019-07-04
Release date:2019-11-06
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Solid-phase synthesis and structural characterisation of phosphoroselenolate-modified DNA: a backbone analogue which does not impose conformational bias and facilitates SAD X-ray crystallography.
Chem Sci, 10, 2019
2WS1
DownloadVisualize
BU of 2ws1 by Molmil
Semi-synthetic analogue of human insulin NMeTyrB26-insulin in monomer form
Descriptor: ACETATE ION, INSULIN A CHAIN, INSULIN B CHAIN
Authors:Brzozowski, A.M, Jiracek, J, Zakova, L, Antolikova, E, Watson, C.J, Turkenburg, J.P, Dodson, G.G.
Deposit date:2009-09-03
Release date:2010-02-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Implications for the Active Form of Human Insulin Based on the Structural Convergence of Highly Active Hormone Analogues.
Proc.Natl.Acad.Sci.USA, 107, 2010
8AJN
DownloadVisualize
BU of 8ajn by Molmil
Structure of the human DDB1-DCAF12 complex
Descriptor: DDB1- and CUL4-associated factor 12, DNA damage-binding protein 1
Authors:Pla-Prats, C, Cavadini, S, Kempf, G, Thoma, N.H.
Deposit date:2022-07-28
Release date:2022-11-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Recognition of the CCT5 di-Glu degron by CRL4 DCAF12 is dependent on TRiC assembly.
Embo J., 42, 2023
8ZJJ
DownloadVisualize
BU of 8zjj by Molmil
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Descriptor: Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1, Ras-related C3 botulinum toxin substrate 1
Authors:Kukimoto-Niino, M, Katsura, K, Ishizuka-Katsura, Y, Mishima-Tsumagari, C, Yonemochi, M, Inoue, M, Nakagawa, R, Kaushik, R, Zhang, K.Y.J, Shirouzu, M.
Deposit date:2024-05-15
Release date:2024-06-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state.
J.Biol.Chem., 300, 2024
5N4E
DownloadVisualize
BU of 5n4e by Molmil
Prolyl oligopeptidase B from Galerina marginata bound to 35mer hydrolysis and macrocyclization substrate - H698A mutant
Descriptor: Alpha-amanitin proprotein, GLYCEROL, Prolyl oligopeptidase
Authors:Czekster, C.M, McMahon, S.A, Ludewig, H, Naismith, J.H.
Deposit date:2017-02-10
Release date:2017-11-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Characterization of a dual function macrocyclase enables design and use of efficient macrocyclization substrates.
Nat Commun, 8, 2017
3HAM
DownloadVisualize
BU of 3ham by Molmil
Structure of the gentamicin-APH(2")-IIa complex
Descriptor: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, Aminoglycoside phosphotransferase, GLYCEROL
Authors:Young, P.G, Baker, E.N, Vakulenko, S.B, Smith, C.A.
Deposit date:2009-05-02
Release date:2009-07-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structures of substrate and nucleotide complexes of Enterococcus faecium aminoglycoside-2''-phosphotransferase-IIa [APH(2'')-IIa] provide insights into substrate selectivity in the APH(2'') subfamily.
J.Bacteriol., 191, 2009
2WQH
DownloadVisualize
BU of 2wqh by Molmil
Crystal structure of CTPR3Y3
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ...
Authors:Krachler, A.M, Sharma, A, Kleanthous, C.
Deposit date:2009-08-21
Release date:2010-04-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer.
Proteins, 78, 2010
7JXY
DownloadVisualize
BU of 7jxy by Molmil
Structure of TTBK1 kinase domain in complex with Compound 18
Descriptor: (3S)-1-[1-(2-aminopyrimidin-4-yl)-1H-pyrazolo[4,3-c]pyridin-6-yl]-3-methylpent-1-yn-3-ol, Tau-tubulin kinase 1
Authors:Chodaprambil, J.V.
Deposit date:2020-08-28
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of Potent and Brain-Penetrant Tau Tubulin Kinase 1 (TTBK1) Inhibitors that Lower Tau Phosphorylation In Vivo.
J.Med.Chem., 64, 2021
9J1P
DownloadVisualize
BU of 9j1p by Molmil
Cryo-EM structure of the g1:Ox-bound human GLP-1R-Gs complex
Descriptor: Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Fan, S, Li, J, Zhuang, J, Zhou, Q, Mai, Y, Lin, B, Wang, M.-W, Wu, C.
Deposit date:2024-08-05
Release date:2025-02-26
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Disulfide-Directed Multicyclic Peptides with N-Terminally Extendable alpha-Helices for Recognition and Activation of G Protein-Coupled Receptors.
J.Am.Chem.Soc., 147, 2025
7JSR
DownloadVisualize
BU of 7jsr by Molmil
Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis
Descriptor: NAD-specific glutamate dehydrogenase
Authors:Lazaro, M, Melero, R, Huet, C, Lopez-Alonso, J.P, Delgado, S, Dodu, A, Bruch, E.M, Abriata, L.A, Alzari, P.M, Valle, M, Lisa, M.N.
Deposit date:2020-08-15
Release date:2021-06-09
Last modified:2025-05-14
Method:X-RAY DIFFRACTION (6.27 Å)
Cite:3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme.
Commun Biol, 4, 2021

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon