PDB: 46169 resultsInfo pagesStatus searchChemie searchBIRD

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2AC0	Structural Basis of DNA Recognition by p53 Tetramers (complex I) Descriptor: 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION Authors: Kitayner, M, Rozenberg, H, Kessler, N, Rabinovich, D, Shakked, Z. Deposit date: 2005-07-18 Release date: 2006-07-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis of DNA Recognition by p53 Tetramers Mol.Cell, 22, 2006
2ADY	Structural Basis of DNA Recognition by p53 Tetramers (complex IV) Descriptor: 5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION Authors: Kitayner, M, Rozenberg, H, Kessler, N, Rabinovich, D, Shakked, Z. Deposit date: 2005-07-21 Release date: 2006-07-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis of DNA Recognition by p53 Tetramers Mol.Cell, 22, 2006
5OMC	Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 (K45E mutant) N-OB domain Descriptor: CHLORIDE ION, DNA damage checkpoint protein LCD1, Replication factor A protein 1 Authors: Deshpande, I, Seeber, A, Shimada, K, Keusch, J.J, Gut, H, Gasser, S.M. Deposit date: 2017-07-28 Release date: 2017-10-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage. Mol. Cell, 68, 2017
4S0N	Crystal Structure of HLTF HIRAN Domain bound to DNA Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3', GLYCEROL, Helicase-like transcription factor, ... Authors: Chavez, D.A, Eichman, B.F. Deposit date: 2015-01-02 Release date: 2015-05-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.501 Å) Cite: HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal. Mol.Cell, 58, 2015
6XWH	Crystal Structure of the Human RXR DNA-Binding Domain Homodimer Bound to the Human Hoxb13 DR0 Response Element Descriptor: Hoxb13 DR0 Response Element, 3'-5' strand, 5'-3' strand, ... Authors: McEwen, A.G, Poussin-Courmontagne, P, Peluso-Iltis, C, Rochel, N. Deposit date: 2020-01-23 Release date: 2020-09-09 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR. Nucleic Acids Res., 48, 2020
5FO5	Structure of the DNA-binding domain of Escherichia coli methionine biosynthesis regulator MetR Descriptor: 1,2-ETHANEDIOL, HTH-TYPE TRANSCRIPTIONAL REGULATOR METR, MAGNESIUM ION Authors: Punekar, A.S, Porter, J, Urbanowski, M.L, Stauffer, G.V, Carr, S.B, Phillips, S.E. Deposit date: 2015-11-18 Release date: 2016-06-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structural Basis for DNA Recognition by the Transcription Regulator Metr. Acta Crystallogr.,Sect.F, 72, 2016
3TED	Crystal structure of the Chd1 DNA-binding domain in complex with a DNA duplex Descriptor: 5'-D(*CP*CP*AP*TP*AP*TP*AP*TP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*AP*TP*AP*TP*AP*TP*GP*G)-3', Chromo domain-containing protein 1 Authors: Sharma, A, Jenkins, K.R, Heroux, A, Bowman, G.D. Deposit date: 2011-08-12 Release date: 2011-11-02 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA-binding domain of Chd1 in complex with a DNA duplex J.Biol.Chem., 2011
1ZGW	NMR structure of E. Coli Ada protein in complex with DNA Descriptor: 5'-D(*GP*CP*AP*AP*AP*TP*TP*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*A)-3', 5'-D(*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3', Ada polyprotein, ... Authors: He, C, Hus, J.C, Sun, L.J, Zhou, P, Norman, D.P, Doetsch, V, Wei, H, Gross, J.D, Lane, W.S, Wagner, G, Verdine, G.L. Deposit date: 2005-04-22 Release date: 2005-10-18 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: A Methylation-Dependent Electrostatic Switch Controls DNA Repair and Transcriptional Activation by E. coli Ada. Mol.Cell, 20, 2005
4R2H	The Crystal Structure of B204, the DNA-packaging ATPase from Sulfolobus Turreted Icosahedral Virus Descriptor: STIV B204 ATPase, ZINC ION Authors: Dellas, N, Nicolay, S.J, Young, M.J. Deposit date: 2014-08-12 Release date: 2016-01-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase. J.Virol., 90, 2015
2XSE	The structural basis for recognition of J-base containing DNA by a novel DNA-binding domain in JBP1 Descriptor: GLYCEROL, NITRATE ION, THYMINE DIOXYGENASE JBP1 Authors: Heidebrecht, T, Christodoulou, E, Chalmers, M.J, Jan, S, ter Riete, B, Grover, R.K, Joosten, R.P, Littler, D, vanLuenen, H, Griffin, P.R, Wentworth, P, Borst, P, Perrakis, A. Deposit date: 2010-09-28 Release date: 2011-03-30 Last modified: 2011-08-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The Structural Basis for Recognition of Base J Containing DNA by a Novel DNA Binding Domain in Jbp1. Nucleic Acids Res., 39, 2011
6CFN	Crystal Structure of the DNA-free Glucocorticoid Receptor DNA Binding Domain Descriptor: Glucocorticoid receptor, ZINC ION Authors: Frank, F, Okafor, C.D, Ortlund, E.A. Deposit date: 2018-02-15 Release date: 2018-09-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor. Sci Rep, 8, 2018
4IX7	Crystal Structure of the insv-BEN domain complexed to its DNA target site Descriptor: 5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3', RE55538p Authors: Ren, A, Serganov, A, Patel, D.J. Deposit date: 2013-01-24 Release date: 2013-03-20 Last modified: 2013-04-03 Method: X-RAY DIFFRACTION (1.581 Å) Cite: The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors. Genes Dev., 27, 2013
7TFL	Atomic model of S. cerevisiae clamp loader RFC bound to DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. Deposit date: 2022-01-06 Release date: 2022-11-16 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.33 Å) Cite: Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
7TFK	Atomic model of S. cerevisiae clamp loader RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. Deposit date: 2022-01-06 Release date: 2022-11-16 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
5W51	Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP Descriptor: 14mer non-template DNA, 29mer template DNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ... Authors: Wang, W, Wang, D. Deposit date: 2017-06-13 Release date: 2018-06-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.404 Å) Cite: Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing. J.Am.Chem.Soc., 139, 2017
1GXP	PhoB effector domain in complex with pho box DNA. Descriptor: 5'-D(*CP*CP*CP*GP*TP*GP*AP*CP*AP*AP* CP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*T)-3', 5'-D(*GP*AP*GP*CP*TP*GP*TP*CP*AP*TP* AP*AP*AP*GP*TP*TP*GP*TP*CP*AP*CP*GP*G)-3', PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN Authors: Blanco, A.G, Sola, M, Gomis-Ruth, F.X, Coll, M. Deposit date: 2002-04-08 Release date: 2002-04-29 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Tandem DNA Recognition by Two-Component Signal Transduction Transcriptional Activator Phob Structure, 10, 2002
5W4U	Pol II elongation complex with an N6-methyladenine-containing template Descriptor: 14mer non-template DNA, 29mer template DNA, 9mer RNA, ... Authors: Wang, W, Wang, D. Deposit date: 2017-06-13 Release date: 2018-06-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing. J.Am.Chem.Soc., 139, 2017
1GDC	REFINED SOLUTION STRUCTURE OF THE GLUCOCORTICOID RECEPTOR DNA-BINDING DOMAIN Descriptor: GLUCOCORTICOID RECEPTOR, ZINC ION Authors: Baumann, H, Paulsen, K, Kovacs, H, Berglund, H, Wright, A.P.H, Gustafsson, J.-A, Hard, T. Deposit date: 1994-03-15 Release date: 1994-06-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Refined solution structure of the glucocorticoid receptor DNA-binding domain. Biochemistry, 32, 1993
1JGG	Even-skipped Homeodomain Complexed to AT-rich DNA Descriptor: 5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3', 5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3', Segmentation Protein Even-Skipped Authors: Hirsch, J.A, Aggarwal, A.K. Deposit date: 2001-06-25 Release date: 2001-07-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity. EMBO J., 14, 1995
2AYE	Crystal structure of the unliganded E2 DNA Binding Domain from HPV6a Descriptor: GLYCEROL, Regulatory protein E2, SULFATE ION Authors: Hooley, E, Brady, R.L, Gaston, K. Deposit date: 2005-09-07 Release date: 2006-08-22 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic Acids Res., 34, 2006
4QQX	Crystal structure of T. fusca Cas3-ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ... Authors: Ke, A, Huo, Y, Nam, K.H. Deposit date: 2014-06-30 Release date: 2014-08-20 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.34 Å) Cite: Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation. Nat.Struct.Mol.Biol., 21, 2014
128D	MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG) COMPLEXED WITH HOECHST 33258 Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1993-06-30 Release date: 1994-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. EMBO J., 11, 1992
130D	MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG) COMPLEXED WITH HOECHST 33342 Descriptor: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1993-06-30 Release date: 1994-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. EMBO J., 11, 1992
2C62	Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3', ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15, SULFATE ION Authors: Werten, S, Moras, D. Deposit date: 2005-11-07 Release date: 2006-01-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.74 Å) Cite: A Global Transcription Cofactor Bound to Juxtaposed Strands of Unwound DNA Nat.Struct.Mol.Biol., 13, 2006
1J75	Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA Descriptor: 5'-D(*TP*CP*GP*CP*GP*CP*G)-3', Tumor Stroma and Activated Macrophage Protein DLM-1 Authors: Schwartz, T, Behlke, J, Lowenhaupt, K, Heinemann, U, Rich, A. Deposit date: 2001-05-15 Release date: 2001-09-01 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins. Nat.Struct.Biol., 8, 2001

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