Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8BG8
DownloadVisualize
BU of 8bg8 by Molmil
SARS-CoV-2 S protein in complex with pT1696 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, pT1696 Fab heavy chain, ...
Authors:Hansen, G, Benecke, T, Vollmer, B, Gruenewald, K, Krey, T.
Deposit date:2022-10-27
Release date:2023-11-08
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Activity of broadly neutralizing antibodies against sarbecoviruses: a trade-off between SARS-CoV-2 variants and distant coronaviruses?
To be published
8C7H
DownloadVisualize
BU of 8c7h by Molmil
Cryo-EM Map of the latTGF-beta 28G11 Fab complex
Descriptor: 28G11 Fab heavy chain, 28G11 Fab light chain, Transforming growth factor beta activator LRRC32, ...
Authors:Ebenhoch, R, Nar, H.
Deposit date:2023-01-16
Release date:2023-03-01
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Anti-GARP Antibodies Inhibit Release of TGF-beta by Regulatory T Cells via Different Modes of Action, but Do Not Influence Their Function In Vitro.
Immunohorizons, 7, 2023
8C9N
DownloadVisualize
BU of 8c9n by Molmil
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Descriptor: Penton protein
Authors:Bufton, J.C, Capin, J, Boruku, U, Garzoni, F, Schaffitzel, C, Berger, I.
Deposit date:2023-01-23
Release date:2023-12-06
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2.
Antib Ther, 6, 2023
5LDY
DownloadVisualize
BU of 5ldy by Molmil
Structure of Yersinia pseudotuberculosis InvD
Descriptor: Ig domain protein group 1 domain protein, PHOSPHATE ION
Authors:Sadana, P, Scrima, A.
Deposit date:2016-06-28
Release date:2017-06-14
Last modified:2020-06-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The invasin D protein from Yersinia pseudotuberculosis selectively binds the Fab region of host antibodies and affects colonization of the intestine
J.Biol.Chem., 2018
6DE7
DownloadVisualize
BU of 6de7 by Molmil
Crystal Structure at 4.3 A Resolution of Glycosylated HIV-1 Clade A BG505 SOSIP.664 Prefusion Env Trimer with Interdomain Stabilization 113C-429GCG in Complex with Broadly Neutralizing Antibodies PGT122 and 35O22
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 heavy chain, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2018-05-11
Release date:2018-06-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4.123 Å)
Cite:Interdomain Stabilization Impairs CD4 Binding and Improves Immunogenicity of the HIV-1 Envelope Trimer.
Cell Host Microbe, 23, 2018
8OG0
DownloadVisualize
BU of 8og0 by Molmil
Crystal structure of MJF14-6-4-2 Fab fragment in complex with epitope peptide
Descriptor: Alpha-synuclein, Fab fragment heavy chain, Fab fragment light chain
Authors:Tars, K, Lieknina, I.
Deposit date:2023-03-17
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.712 Å)
Cite:Structural basis of epitope recognition by anti-alpha synuclein antibodies MJF14-6-4-2
To be published
5DR5
DownloadVisualize
BU of 5dr5 by Molmil
Crystal structure of the sclerostin-neutralizing Fab AbD09097
Descriptor: AbD09097 Fab heavy chain, AbD09097 Fab light chain
Authors:Mueller, T.D, Boschert, V, Weidauer, S.E, Muth, E.M, Knappik, A, Frisch, C.
Deposit date:2015-09-15
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Generation and Affinity Maturation of Neutralizing Anti-Sclerostin Antibodies
to be published
1F9Q
DownloadVisualize
BU of 1f9q by Molmil
CRYSTAL STRUCTURE OF PLATELET FACTOR 4
Descriptor: PLATELET FACTOR 4
Authors:Yang, J, Doyle, M, Faulk, T, Visentin, G, Aster, R, Edwards, B.
Deposit date:2000-07-11
Release date:2003-08-26
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure Comparison of Two Platelet Factor 4 Mutants with the Wild-Type Reveals the Epitopes for the Heparin-Induced Thrombocytopenia Antibodies
To be Published
1F9R
DownloadVisualize
BU of 1f9r by Molmil
CRYSTAL STRUCTURE OF PLATELET FACTOR 4 MUTANT 1
Descriptor: PLATELET FACTOR 4
Authors:Yang, J, Doyle, M, Faulk, T, Visentin, G, Aster, R, Edwards, B.
Deposit date:2000-07-11
Release date:2003-08-26
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure Comparison of Two Platelet Factor 4 Mutants with the Wild-type Reveals the Epitopes for the Heparin-induced Thrombocytopenia Antibodies
To be Published
1F9S
DownloadVisualize
BU of 1f9s by Molmil
CRYSTAL STRUCTURE OF PLATELET FACTOR 4 MUTANT 2
Descriptor: PLATELET FACTOR 4
Authors:Yang, J, Doyle, M, Faulk, T, Visentin, G, Aster, R, Edwards, B.
Deposit date:2000-07-11
Release date:2003-08-26
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure Comparison of Two Platelet Factor 4 Mutants with the Wild-type Reveals the Epitopes for the Heparin-induced Thrombocytopenia Antibodies
To be Published
1FUJ
DownloadVisualize
BU of 1fuj by Molmil
PR3 (MYELOBLASTIN)
Descriptor: PR3, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Fujinaga, M, Chernaia, M.M, Halenbeck, R, Koths, K, James, M.N.G.
Deposit date:1996-01-25
Release date:1996-07-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of PR3, a neutrophil serine proteinase antigen of Wegener's granulomatosis antibodies.
J.Mol.Biol., 261, 1996
6CEX
DownloadVisualize
BU of 6cex by Molmil
Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin in complex with small molecule N-Cyclohexyltaurine
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:wilson, I.A, Kadam, R.U.
Deposit date:2018-02-12
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:A small-molecule fragment that emulates binding of receptor and broadly neutralizing antibodies to influenza A hemagglutinin.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YS6
DownloadVisualize
BU of 5ys6 by Molmil
Structure of the ectodomain of pseudorabies virus glycoproten B
Descriptor: PRV glycoproten B
Authors:Hu, X.L, Yang, F.L.
Deposit date:2017-11-13
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Two classes of protective antibodies against pseudorabies virus variant glycoprotein B: implications for vaccine design
To Be Published
6O89
DownloadVisualize
BU of 6o89 by Molmil
Anti-CD28xCD3 CODV Fab
Descriptor: Anti-CD28xCD3 CODV-Fab Heavy chain, Anti-CD28xCD3 CODV-Fab Light chain
Authors:Lord, D.M, Wei, R.R.
Deposit date:2019-03-09
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Trispecific antibodies enhance the therapeutic efficacy of tumor-directed T cells through T cell receptor co-stimulation
Nat Cancer, 1, 2020
4O9H
DownloadVisualize
BU of 4o9h by Molmil
Structure of Interleukin-6 in complex with a Camelid Fab fragment
Descriptor: Heavy Chain of the Camelid Fab fragment 61H7, Interleukin-6, Light Chain of the Camelid Fab fragment 61H7
Authors:Klarenbeek, A, Blanchetot, C, Schragel, G, Sadi, A.S, Ongenae, N, Hemrika, W, Wijdenes, J, Spinelli, S, Desmyter, A, Cambillau, C, Hultberg, A, Kretz-rommel, A, Dreier, T, De haard, H.J.W, Roovers, R.C.
Deposit date:2014-01-02
Release date:2015-04-15
Last modified:2015-04-29
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Combining residues of naturally-occurring Camelid somatic affinity variants yields ultra-potent human therapeutic IL-6 antibodies
To be Published
8TQI
DownloadVisualize
BU of 8tqi by Molmil
Hemagglutinin-neuraminidase from Human parainfluenza virus type 3: complex with rPIV3-23 and rPIV3-28 Fabs
Descriptor: Heavy chain Fab rPIV3-23, Heavy chain Fab rPIV3-28, Hemagglutinin-neuraminidase, ...
Authors:Otrelo-Cardoso, A.R, Jardetzky, T.S.
Deposit date:2023-08-07
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Functional and structural characteristics of human monoclonal antibodies that potently neutralize human parainfluenza virus type 3
To Be Published
8TQK
DownloadVisualize
BU of 8tqk by Molmil
Human parainfluenza virus type 3 prefusion F trimer in complex with rPIV3-18 Fab
Descriptor: Fusion glycoprotein F0, Heavy chain Fab rPIV3-18, Light chain Fab rPIV3-28
Authors:Otrelo-Cardoso, A.R, Jardetzky, T.S.
Deposit date:2023-08-07
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Functional and structural characteristics of human monoclonal antibodies that potently neutralize human parainfluenza virus type 3
To be published
7JR7
DownloadVisualize
BU of 7jr7 by Molmil
Cryo-EM structure of ABCG5/G8 in complex with Fab 2E10 and 11F4
Descriptor: ATP-binding cassette sub-family G member 5, ATP-binding cassette sub-family G member 8, Fab 11F4 heavy chain, ...
Authors:Huang, C.S, Yu, X, Min, X, Wang, Z, Zhang, H.
Deposit date:2020-08-11
Release date:2021-04-07
Last modified:2021-05-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of ABCG5/G8 in complex with modulating antibodies
Commun Biol, 4, 2021
7DSS
DownloadVisualize
BU of 7dss by Molmil
Complex of FMDV and M8 Nab
Descriptor: M8 Nab, VP1 of O type FMDV capsid, VP2 of O-type FMDV capsid, ...
Authors:Dong, H, Liu, P.
Deposit date:2021-01-02
Release date:2021-03-31
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural and molecular basis for foot-and-mouth disease virus neutralization by two potent protective antibodies.
Protein Cell, 13, 2022
7DST
DownloadVisualize
BU of 7dst by Molmil
FMDV capsid in complex with M170 Nab
Descriptor: M170 Nab, VP1 of O type FMDV capsid, VP2 of O type FMDV capsid, ...
Authors:Dong, H, Liu, P.
Deposit date:2021-01-02
Release date:2021-03-10
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural and molecular basis for foot-and-mouth disease virus neutralization by two potent protective antibodies.
Protein Cell, 13, 2022
7DN5
DownloadVisualize
BU of 7dn5 by Molmil
The cryo-EM structure of human papillomavirus type 58 pseudovirus
Descriptor: Major capsid protein L1
Authors:He, M.Z, Chi, X, Zha, Z.H, Zheng, Q.B, Li, S.W, Xia, N.S.
Deposit date:2020-12-08
Release date:2021-01-20
Method:ELECTRON MICROSCOPY (4.11 Å)
Cite:Structural basis for the shared neutralization mechanism of three classes of human papillomavirus type 58 antibodies with disparate modes of binding
to be published
7LVB
DownloadVisualize
BU of 7lvb by Molmil
CHOLERA TOXIN B SUBUNIT WITH ATTACHED SIV EPITOPE
Descriptor: CHLORIDE ION, Cholera enterotoxin B-subunit,Surface protein gp120, TRIETHYLENE GLYCOL, ...
Authors:Patskovsky, Y, Cardozo, T.J.
Deposit date:2021-02-24
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cholera toxin B scaffolded, focused SIV V2 epitope elicits antibodies that influence the risk of SIV mac251 acquisition in macaques.
Front Immunol, 14, 2023
7UCX
DownloadVisualize
BU of 7ucx by Molmil
LRP8 11H1 Fab complexed to a cyclized CR1 peptide
Descriptor: 11H1 Fab Heavy chain, 11H1 Fab Light chain, Cyclized CR1 peptide, ...
Authors:Argiriadi, M.A, Deng, K, Egan, D, Gao, L, Gizatullin, F, Harlan, J, Karaoglu, D, Qiu, W, Goodearl, A.
Deposit date:2022-03-17
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:The use of cyclic peptide antigens to generate LRP8 specific antibodies
Front Drug Discov (Lausanne), 2, 2023
7WTK
DownloadVisualize
BU of 7wtk by Molmil
SARS-CoV-2 Omicron variant spike in complex with Fab XGv286
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of XGv286, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022
7WTJ
DownloadVisualize
BU of 7wtj by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286
Descriptor: Heavy chain of XGv286, Light chain of XGv286, Spike protein S1
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon