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6RQP
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BU of 6rqp by Molmil
Steady-state-SMX dark state structure of bacteriorhodopsin
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, ...
Authors:Weinert, T, Skopintsev, P, James, D, Kekilli, D, Furrer, A, Bruenle, S, Mous, S, Nogly, P, Standfuss, J.
Deposit date:2019-05-16
Release date:2019-07-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Proton uptake mechanism in bacteriorhodopsin captured by serial synchrotron crystallography.
Science, 365, 2019
8CDQ
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BU of 8cdq by Molmil
Plasmodium falciparum Myosin A full-length, post-rigor state complexed to the inhibitor KNX-002 and Mg.ATP-gamma-S
Descriptor: 1,2-ETHANEDIOL, 1-(4-methoxyphenyl)-~{N}-[(3-thiophen-2-yl-1~{H}-pyrazol-4-yl)methyl]cyclopropan-1-amine, GLYCEROL, ...
Authors:Moussaoui, D, Robblee, J.P, Robert-Paganin, J, Auguin, D, Fisher, F, Fagnant, P.M, MacFarlane, J.E, Schaletzky, J, Wehri, E, Mueller-Dieckmann, C, Baum, J, Trybus, K.M, Houdusse, A.
Deposit date:2023-01-31
Release date:2023-06-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Mechanism of small molecule inhibition of Plasmodium falciparum myosin A informs antimalarial drug design.
Nat Commun, 14, 2023
8F9V
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BU of 8f9v by Molmil
Crystal structure of Ky15.8 Fab in complex with circumsporozoite protein KQPA peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein KQPA peptide, Ky15.8 Antibody, ...
Authors:Thai, E, Prieto, K, Julien, J.P.
Deposit date:2022-11-24
Release date:2023-11-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
9F8B
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BU of 9f8b by Molmil
Crystal structure of human monoacylglycerol lipase in complex with compound 7n
Descriptor: (4~{a}~{R},8~{a}~{S})-6-[4-[[4-(trifluoromethyl)phenyl]methyl]piperidin-1-yl]carbonyl-4,4~{a},5,7,8,8~{a}-hexahydropyrido[4,3-b][1,4]oxazin-3-one, 1,2-ETHANEDIOL, Monoglyceride lipase, ...
Authors:Kuhn, B, Ritter, M, Hornsperger, B, Bell, C, Kocer, B, Rombach, D, Richter, H, Grether, U, Gobbi, L, Kuratli, M, Collin, L, Benz, J.
Deposit date:2024-05-06
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-Guided Discovery of cis -Hexahydro-pyrido-oxazinones as Reversible, Drug-like Monoacylglycerol Lipase Inhibitors.
J.Med.Chem., 67, 2024
7FBR
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BU of 7fbr by Molmil
Solution structure of The first RNA binding domain of Matrin-3
Descriptor: Matrin-3
Authors:Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2021-07-12
Release date:2022-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1 H, 13 C and 15 N resonance assignments and solution structures of the two RRM domains of Matrin-3.
Biomol.Nmr Assign., 16, 2022
6RSE
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BU of 6rse by Molmil
Structure based optimization of JAK1-ATP binding pocket Inhibitors in the aminopyrazole class
Descriptor: Tyrosine-protein kinase JAK1, methyl ~{N}-[4-aminocarbonyl-1-[(3~{R},4~{R})-4-(cyanomethyl)-1-[(4-ethenyl-2-fluoranyl-5-oxidanyl-phenyl)methyl]-3-fluoranyl-piperidin-4-yl]pyrazol-3-yl]carbamate
Authors:Brown, D.G, Lupardus, P.J.
Deposit date:2019-05-21
Release date:2020-07-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure based optimization of JAK1-ATP binding pocket Inhibitors in the aminopyrazole class
To Be Published
8ETE
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BU of 8ete by Molmil
Bile Salt Hydrolase from B. longum with covalent inhibitor bound
Descriptor: (5R)-1-fluoro-5-[(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-7-hydroxy-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-1-yl]hexan-2-one (non-preferred name), Conjugated bile acid hydrolase
Authors:Walker, M.E, Redinbo, M.R.
Deposit date:2022-10-17
Release date:2023-11-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural diversity of bile salt hydrolases reveals rationale for substrate selectivity
To Be Published
9FAG
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BU of 9fag by Molmil
Human adenovirus type 36 fiber knob in complex with 4,9-O,5-N-triacetylneuraminic acid
Descriptor: 1,2-ETHANEDIOL, Fiber, TRIETHYLENE GLYCOL, ...
Authors:Strebl, M, Liaci, A.M, Stehle, T.
Deposit date:2024-05-10
Release date:2025-01-22
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Extended receptor repertoire of an adenovirus associated with human obesity.
Plos Pathog., 21, 2025
6ZBI
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BU of 6zbi by Molmil
Ternary complex of Calmodulin bound to 2 molecules of NHE1
Descriptor: CALCIUM ION, Calmodulin-1, Sodium/hydrogen exchanger 1
Authors:Prestel, A, Kragelund, B.B, Pedersen, E.S, Pedersen, S.F, Sjoegaard-Frich, L.M.
Deposit date:2020-06-08
Release date:2021-03-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Dynamic Na + /H + exchanger 1 (NHE1) - calmodulin complexes of varying stoichiometry and structure regulate Ca 2+ -dependent NHE1 activation.
Elife, 10, 2021
8CK3
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BU of 8ck3 by Molmil
STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-(3,5-Difluoro-phenyl)-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol
Descriptor: (4~{S})-1-[3,5-bis(fluoranyl)phenyl]-5,5-bis(fluoranyl)-3-methylsulfonyl-4,6-dihydrocyclopenta[c]thiophen-4-ol, Aryl hydrocarbon receptor nuclear translocator, DIMETHYL SULFOXIDE, ...
Authors:Musil, D, Lehmannn, M, Diehl, L.
Deposit date:2023-02-14
Release date:2023-07-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Discovery of Cycloalkyl[ c ]thiophenes as Novel Scaffolds for Hypoxia-Inducible Factor-2 alpha Inhibitors.
J.Med.Chem., 66, 2023
8CK8
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BU of 8ck8 by Molmil
STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-Cyclohexyloxy-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol
Descriptor: (4~{S})-1-cyclohexyloxy-5,5-bis(fluoranyl)-3-methylsulfonyl-4,6-dihydrocyclopenta[c]thiophen-4-ol, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Musil, D.
Deposit date:2023-02-14
Release date:2023-07-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Discovery of Cycloalkyl[ c ]thiophenes as Novel Scaffolds for Hypoxia-Inducible Factor-2 alpha Inhibitors.
J.Med.Chem., 66, 2023
8CAI
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BU of 8cai by Molmil
Streptomycin and Hygromycin B bound to the 30S body
Descriptor: 16S rRNA, 30S ribosomal protein S16, 30S ribosomal protein S2, ...
Authors:Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N.
Deposit date:2023-01-24
Release date:2023-07-26
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:Structural conservation of antibiotic interaction with ribosomes.
Nat.Struct.Mol.Biol., 30, 2023
6END
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BU of 6end by Molmil
LTA4 hydrolase in complex with Compound15
Descriptor: 4-([1,3]thiazolo[4,5-b]pyridin-2-yloxy)benzaldehyde, ACETATE ION, IMIDAZOLE, ...
Authors:Srinivas, H.
Deposit date:2017-10-04
Release date:2017-12-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Feasibility and physiological relevance of designing highly potent aminopeptidase-sparing leukotriene A4 hydrolase inhibitors.
Sci Rep, 7, 2017
8CK4
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BU of 8ck4 by Molmil
STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (4S)-1-(3,5-difluorophenyl)-5,5-difluoro-3-methanesulfonyl-4,5,6,7-tetrahydro-2-benzothiophen-4-ol
Descriptor: (4~{S})-1-[3,5-bis(fluoranyl)phenyl]-5,5-bis(fluoranyl)-3-methylsulfonyl-6,7-dihydro-4~{H}-2-benzothiophen-4-ol, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Musil, D.
Deposit date:2023-02-14
Release date:2023-07-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Discovery of Cycloalkyl[ c ]thiophenes as Novel Scaffolds for Hypoxia-Inducible Factor-2 alpha Inhibitors.
J.Med.Chem., 66, 2023
5LMZ
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BU of 5lmz by Molmil
Fluorinase from Streptomyces sp. MA37
Descriptor: 1-DEAZA-ADENOSINE, CHLORIDE ION, Fluorinase, ...
Authors:Mann, G, O'Hagan, D, Naismith, J.H, Bandaranayaka, N.
Deposit date:2016-08-02
Release date:2016-08-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Identification of fluorinases from Streptomyces sp MA37, Norcardia brasiliensis, and Actinoplanes sp N902-109 by genome mining.
Chembiochem, 15, 2014
6APW
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BU of 6apw by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor
Descriptor: 4-[(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)methyl]benzoic acid, Bifunctional ligase/repressor BirA
Authors:Cini, D.A, Wilce, M.C.J.
Deposit date:2017-08-18
Release date:2018-02-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.614 Å)
Cite:Halogenation of Biotin Protein Ligase Inhibitors Improves Whole Cell Activity against Staphylococcus aureus.
ACS Infect Dis, 4, 2018
6SJ4
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BU of 6sj4 by Molmil
Amidohydrolase, AHS with substrate analog
Descriptor: 1,2-ETHANEDIOL, 3-(3-hydroxyphenyl)carbonyloxybenzoic acid, Amidohydrolase, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
7V5K
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BU of 7v5k by Molmil
MERS S ectodomain trimer in complex with neutralizing antibody 0722 (state 1)
Descriptor: 0722 H, 0722 L, Spike glycoprotein
Authors:Wang, X, Zhao, J, Wang, Z, Zeng, J, Zhang, S, Wang, Y.
Deposit date:2021-08-17
Release date:2022-08-24
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:MERS S ectodomain trimer in complex with neutralizing antibody 0722 (state 1)
to be published
9FKR
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BU of 9fkr by Molmil
KAT6A IN COMPLEX WITH SMALL MOLECULE INHIBITOR BAY-184
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 6-(dimethylamino)-~{N}-(2-phenylphenyl)sulfonyl-1-benzofuran-2-carboxamide, Histone acetyltransferase KAT6A, ...
Authors:Hillig, R.C, Puetter, V.
Deposit date:2024-06-04
Release date:2024-11-06
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Discovery and Characterization of BAY-184: A New Potent and Selective Acylsulfonamide-Benzofuran In Vivo -Active KAT6AB Inhibitor.
J.Med.Chem., 67, 2024
8CGJ
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BU of 8cgj by Molmil
Streptomycin bound to the 30S body
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ...
Authors:Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N.
Deposit date:2023-02-05
Release date:2023-07-26
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (1.79 Å)
Cite:Structural conservation of antibiotic interaction with ribosomes.
Nat.Struct.Mol.Biol., 30, 2023
6EQ9
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BU of 6eq9 by Molmil
Crystal structure of JNK3 in complex with AMP-PCP
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Macedo, J.T, Stehle, T, Blaum, B.S.
Deposit date:2017-10-12
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Optimization of a Pyridinylimidazole Scaffold: Shifting the Selectivity from p38 alpha Mitogen-Activated Protein Kinase to c-Jun N-Terminal Kinase 3.
ACS Omega, 3, 2018
4PCL
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BU of 4pcl by Molmil
X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAM and a Manganese ion.
Descriptor: 1,2-ETHANEDIOL, MANGANESE (II) ION, O-methyltransferase family protein, ...
Authors:Fairman, J.W, Edwards, T.E, Lorimer, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2014-04-15
Release date:2014-06-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum.
Plos Pathog., 11, 2015
9EWP
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BU of 9ewp by Molmil
Crystal structure of yeast E2 Ubiquitin-conjugating enzyme Ubc6 UBC domain
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Swarnkar, A, Stein, A.
Deposit date:2024-04-04
Release date:2024-11-20
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Determinants of chemoselectivity in ubiquitination by the J2 family of ubiquitin-conjugating enzymes.
Embo J., 43, 2024
9J8B
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BU of 9j8b by Molmil
Human Glycine Transporter 1 in the Apo State with an Inward-Facing Conformation
Descriptor: Isoform GlyT-1B of Sodium- and chloride-dependent glycine transporter 1
Authors:Wei, Y, Li, N, Li, R, Zhao, Y.
Deposit date:2024-08-21
Release date:2025-03-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Modulation of the human GlyT1 by clinical drugs and cholesterol.
Nat Commun, 16, 2025
6EHK
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BU of 6ehk by Molmil
The crystal structure of CK2alpha in complex with CAM4712 and compound 37
Descriptor: 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methyl]ethanamine, 2-hydroxy-5-methylbenzoic acid, ACETATE ION, ...
Authors:Brear, P, De Fusco, C, Iegre, J, Yoshida, M, Mitchell, S, Rossmann, M, Carro, L, Sore, H, Hyvonen, M, Spring, D.
Deposit date:2017-09-13
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Second-generation CK2 alpha inhibitors targeting the alpha D pocket.
Chem Sci, 9, 2018

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